Variant report

Variant	rs16926660
Chromosome Location	chr10:26483265-26483266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10508708	1.00[CHB][hapmap]
rs10508709	1.00[CHB][hapmap]
rs10508713	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10828929	1.00[CHB][hapmap]
rs10828931	1.00[CHB][hapmap]
rs10828932	1.00[CHB][hapmap]
rs10828934	1.00[CHB][hapmap]
rs10828938	1.00[CHB][hapmap]
rs11014891	1.00[CHB][hapmap]
rs11014893	1.00[CHB][hapmap]
rs11014894	1.00[CHB][hapmap]
rs11014896	1.00[CHB][hapmap]
rs11014897	1.00[CHB][hapmap]
rs11014898	1.00[CHB][hapmap]
rs11014900	1.00[CHB][hapmap]
rs11014905	1.00[CHB][hapmap]
rs11014910	1.00[CHB][hapmap]
rs11014911	1.00[CHB][hapmap]
rs11014912	1.00[CHB][hapmap]
rs11014914	1.00[CHB][hapmap]
rs11812370	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11815755	0.99[EUR][1000 genomes]
rs11816461	1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11816664	0.82[AMR][1000 genomes]
rs11817896	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12240899	1.00[CHB][hapmap]
rs12246034	1.00[CHB][hapmap]
rs12252321	1.00[CHB][hapmap]
rs12252394	1.00[CHB][hapmap]
rs12254208	1.00[CHB][hapmap]
rs12257119	1.00[CHB][hapmap]
rs12257431	1.00[CHB][hapmap]
rs12259136	1.00[CHB][hapmap]
rs12261043	1.00[CHB][hapmap]
rs12263132	1.00[CHB][hapmap]
rs12265280	1.00[CHB][hapmap]
rs12268406	1.00[CHB][hapmap]
rs12268729	1.00[CHB][hapmap]
rs16926512	1.00[CHB][hapmap]
rs16926578	1.00[CHB][hapmap]
rs16926590	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs16926628	1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16926667	0.89[TSI][hapmap];0.99[EUR][1000 genomes]
rs17666893	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17667157	1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17739436	1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17739453	1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17739680	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2222351	0.82[AMR][1000 genomes]
rs3897758	0.85[AMR][1000 genomes]
rs41279908	0.85[AMR][1000 genomes]
rs4370835	0.85[AMR][1000 genomes]
rs56153367	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56234810	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57140603	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57687518	0.82[AMR][1000 genomes]
rs58309865	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58990448	0.99[EUR][1000 genomes]
rs59646929	0.85[AMR][1000 genomes]
rs61284099	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6482526	1.00[CHB][hapmap]
rs6482527	1.00[CHB][hapmap]
rs6650135	1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7074143	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7082557	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7089743	1.00[CHB][hapmap]
rs72787349	0.85[AMR][1000 genomes]
rs72787350	0.85[AMR][1000 genomes]
rs72789947	0.82[AMR][1000 genomes]
rs72789954	0.85[AMR][1000 genomes]
rs72789957	0.82[AMR][1000 genomes]
rs72789960	0.82[AMR][1000 genomes]
rs72793209	0.85[AMR][1000 genomes]
rs72793210	0.85[AMR][1000 genomes]
rs72793214	0.85[AMR][1000 genomes]
rs72793215	0.82[AMR][1000 genomes]
rs72793218	0.82[AMR][1000 genomes]
rs72793940	0.85[AMR][1000 genomes]
rs72793945	0.82[AMR][1000 genomes]
rs72793992	0.85[AMR][1000 genomes]
rs74126361	0.85[AMR][1000 genomes]
rs74126386	0.82[AMR][1000 genomes]
rs74126397	0.85[AMR][1000 genomes]
rs74126400	0.82[AMR][1000 genomes]
rs74126401	0.82[AMR][1000 genomes]
rs74126402	0.85[AMR][1000 genomes]
rs74129103	0.82[AMR][1000 genomes]
rs74129109	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74129112	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74129113	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7894269	1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7903177	1.00[CHB][hapmap]
rs7906451	1.00[CHB][hapmap]
rs7909349	1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7913074	1.00[CHB][hapmap]
rs7916305	1.00[CHB][hapmap]
rs7918334	1.00[CHB][hapmap]
rs7919219	1.00[CHB][hapmap]
rs7919609	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26474000-26491000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26483000-26486600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26483200-26483400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr10:26483200-26489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links