Variant report

Variant	rs16926667
Chromosome Location	chr10:26486928-26486929
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508713	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs11812152	1.00[CHB][hapmap]
rs11812332	1.00[CHB][hapmap]
rs11812370	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812543	1.00[CHB][hapmap]
rs11813728	1.00[CHB][hapmap]
rs11815755	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816461	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817896	0.83[EUR][1000 genomes]
rs11818977	1.00[CHB][hapmap]
rs11819181	1.00[CHB][hapmap]
rs11819744	1.00[CHB][hapmap]
rs1521037	1.00[CHB][hapmap]
rs1521038	1.00[CHB][hapmap]
rs16926590	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap]
rs16926628	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs16926655	0.85[ASW][hapmap]
rs16926660	0.89[TSI][hapmap];0.99[EUR][1000 genomes]
rs16926664	0.85[ASW][hapmap]
rs17666132	1.00[CHB][hapmap]
rs17666138	1.00[CHB][hapmap]
rs17666263	1.00[CHB][hapmap]
rs17666893	0.89[EUR][1000 genomes]
rs17667157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738738	1.00[CHB][hapmap]
rs17738768	1.00[CHB][hapmap]
rs17738883	1.00[CHB][hapmap]
rs17738907	1.00[CHB][hapmap]
rs17738949	1.00[CHB][hapmap]
rs17739436	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739453	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739680	0.89[EUR][1000 genomes]
rs1935485	1.00[CHB][hapmap]
rs41454449	1.00[CHB][hapmap]
rs4370835	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs56153367	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56234810	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140603	1.00[EUR][1000 genomes]
rs58309865	0.86[EUR][1000 genomes]
rs58990448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284099	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650135	1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074143	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs7082557	0.83[EUR][1000 genomes]
rs74129107	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129109	0.82[EUR][1000 genomes]
rs74129112	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476089	1.00[CHB][hapmap]
rs7894269	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909349	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs7919609	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16926667	GPR158	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26474000-26491000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26483200-26489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:26483600-26488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:26484800-26487400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:26484800-26493400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:26486600-26493800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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