Variant report

Variant	rs11815755
Chromosome Location	chr10:26487829-26487830
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508713	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs11812370	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813730	1.00[CHB][hapmap]
rs11816461	0.86[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817896	0.83[EUR][1000 genomes]
rs16926590	0.86[CEU][hapmap]
rs16926628	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs16926660	0.99[EUR][1000 genomes]
rs16926667	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666893	0.89[EUR][1000 genomes]
rs17667157	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739436	0.86[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739453	0.86[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739680	0.89[EUR][1000 genomes]
rs56153367	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56234810	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140603	1.00[EUR][1000 genomes]
rs58309865	0.86[EUR][1000 genomes]
rs58990448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284099	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650135	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074143	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs7082557	0.83[EUR][1000 genomes]
rs74129107	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129109	0.82[EUR][1000 genomes]
rs74129112	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894269	0.86[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909349	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7919609	0.82[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26474000-26491000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26483200-26489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:26483600-26488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:26484800-26493400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:26486600-26493800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:26487400-26489600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:26487600-26488600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:26487800-26489200	Enhancers	HUES48 Cell Line	embryonic stem cell

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