Variant report

Variant	rs6650135
Chromosome Location	chr10:26464492-26464493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10508713	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11812152	1.00[CHB][hapmap]
rs11812332	1.00[CHB][hapmap]
rs11812370	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812543	1.00[CHB][hapmap]
rs11813728	1.00[CHB][hapmap]
rs11815755	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816461	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816664	0.83[AMR][1000 genomes]
rs11817896	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11818977	1.00[CHB][hapmap]
rs11819181	1.00[CHB][hapmap]
rs11819744	1.00[CHB][hapmap]
rs1521037	1.00[CHB][hapmap]
rs1521038	1.00[CHB][hapmap]
rs16926590	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16926628	0.84[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16926660	1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16926667	1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666132	1.00[CHB][hapmap]
rs17666138	1.00[CHB][hapmap]
rs17666263	1.00[CHB][hapmap]
rs17666893	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17667157	1.00[CHB][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738738	1.00[CHB][hapmap]
rs17738768	1.00[CHB][hapmap]
rs17738883	1.00[CHB][hapmap]
rs17738907	1.00[CHB][hapmap]
rs17738949	1.00[CHB][hapmap]
rs17739436	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739453	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739680	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1935485	1.00[CHB][hapmap];0.84[AFR][1000 genomes]
rs2222351	0.83[AMR][1000 genomes]
rs3897758	0.86[AMR][1000 genomes]
rs41279908	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41454449	1.00[CHB][hapmap]
rs4370835	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes]
rs56153367	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56234810	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140603	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57687518	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58309865	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58990448	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59646929	0.86[AMR][1000 genomes]
rs61284099	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074143	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7082557	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72787349	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72787350	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72789947	0.83[AMR][1000 genomes]
rs72789954	0.86[AMR][1000 genomes]
rs72789957	0.83[AMR][1000 genomes]
rs72789960	0.83[AMR][1000 genomes]
rs72793209	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72793210	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72793214	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72793215	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72793218	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72793940	0.86[AMR][1000 genomes]
rs72793945	0.83[AMR][1000 genomes]
rs72793992	0.86[AMR][1000 genomes]
rs74126361	0.86[AMR][1000 genomes]
rs74126386	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74126397	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74126400	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74126401	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74126402	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74129103	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74129107	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129109	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74129112	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129113	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476089	1.00[CHB][hapmap]
rs7894269	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909349	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7919609	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26453800-26466800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26459400-26466800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:26461000-26464600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:26461400-26466800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:26462800-26464600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:26464400-26465000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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