Variant report

Variant	rs72789960
Chromosome Location	chr10:26320311-26320312
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 183 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs10508713	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11014866	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11014874	0.96[EUR][1000 genomes]
rs11812152	1.00[ASN][1000 genomes]
rs11812332	1.00[ASN][1000 genomes]
rs11812335	1.00[ASN][1000 genomes]
rs11812370	0.83[AMR][1000 genomes]
rs11812543	1.00[ASN][1000 genomes]
rs11812786	1.00[ASN][1000 genomes]
rs11812816	1.00[ASN][1000 genomes]
rs11812817	1.00[ASN][1000 genomes]
rs11812818	1.00[ASN][1000 genomes]
rs11813672	0.95[EUR][1000 genomes]
rs11813728	1.00[ASN][1000 genomes]
rs11813730	1.00[ASN][1000 genomes]
rs11816237	1.00[ASN][1000 genomes]
rs11816333	1.00[ASN][1000 genomes]
rs11816461	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11816664	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817896	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818587	1.00[ASN][1000 genomes]
rs11818765	1.00[ASN][1000 genomes]
rs11818977	1.00[ASN][1000 genomes]
rs11819096	1.00[ASN][1000 genomes]
rs11819181	1.00[ASN][1000 genomes]
rs11819262	0.94[EUR][1000 genomes]
rs11819744	1.00[ASN][1000 genomes]
rs1521037	1.00[ASN][1000 genomes]
rs1521038	1.00[ASN][1000 genomes]
rs1591907	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16926590	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926628	0.83[AMR][1000 genomes]
rs16926660	0.82[AMR][1000 genomes]
rs17666095	1.00[ASN][1000 genomes]
rs17666132	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17666138	1.00[ASN][1000 genomes]
rs17666263	1.00[ASN][1000 genomes]
rs17666893	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17667157	0.92[AMR][1000 genomes]
rs17738738	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17738768	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17738883	1.00[ASN][1000 genomes]
rs17738907	1.00[ASN][1000 genomes]
rs17738937	1.00[ASN][1000 genomes]
rs17738949	1.00[ASN][1000 genomes]
rs17739436	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17739453	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17739680	0.96[AMR][1000 genomes]
rs2222351	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368119	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34028452	1.00[ASN][1000 genomes]
rs34044028	1.00[ASN][1000 genomes]
rs34233278	1.00[ASN][1000 genomes]
rs34508968	1.00[ASN][1000 genomes]
rs35434254	1.00[ASN][1000 genomes]
rs35910926	1.00[ASN][1000 genomes]
rs36015296	1.00[ASN][1000 genomes]
rs3897758	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279908	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41454449	1.00[ASN][1000 genomes]
rs4370835	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839812	1.00[ASN][1000 genomes]
rs55841525	1.00[ASN][1000 genomes]
rs55852999	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56153367	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56234810	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56284120	1.00[ASN][1000 genomes]
rs56352608	1.00[ASN][1000 genomes]
rs56387846	1.00[ASN][1000 genomes]
rs57140603	0.82[AMR][1000 genomes]
rs57328269	1.00[ASN][1000 genomes]
rs57347362	1.00[ASN][1000 genomes]
rs57681362	1.00[ASN][1000 genomes]
rs57687518	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58231370	1.00[ASN][1000 genomes]
rs58309865	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58552357	1.00[ASN][1000 genomes]
rs59085026	1.00[ASN][1000 genomes]
rs59646929	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59914029	1.00[ASN][1000 genomes]
rs60489830	1.00[ASN][1000 genomes]
rs60781504	1.00[ASN][1000 genomes]
rs61247361	1.00[ASN][1000 genomes]
rs61284099	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61520006	1.00[ASN][1000 genomes]
rs6650135	0.83[AMR][1000 genomes]
rs7070437	0.96[EUR][1000 genomes]
rs7074143	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7082557	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72787349	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72787350	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789947	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789949	1.00[ASN][1000 genomes]
rs72789954	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789957	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72791165	1.00[ASN][1000 genomes]
rs72791168	1.00[ASN][1000 genomes]
rs72793209	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793210	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793214	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793215	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793218	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793939	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793940	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793941	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72793942	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72793944	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72793945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793946	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72793947	1.00[ASN][1000 genomes]
rs72793948	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72793949	1.00[ASN][1000 genomes]
rs72793950	1.00[ASN][1000 genomes]
rs72793951	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72793953	1.00[ASN][1000 genomes]
rs72793954	1.00[ASN][1000 genomes]
rs72793955	1.00[ASN][1000 genomes]
rs72793956	1.00[ASN][1000 genomes]
rs72793957	1.00[ASN][1000 genomes]
rs72793958	1.00[ASN][1000 genomes]
rs72793960	1.00[ASN][1000 genomes]
rs72793962	1.00[ASN][1000 genomes]
rs72793963	1.00[ASN][1000 genomes]
rs72793964	1.00[ASN][1000 genomes]
rs72793966	1.00[ASN][1000 genomes]
rs72793968	1.00[ASN][1000 genomes]
rs72793970	1.00[ASN][1000 genomes]
rs72793972	1.00[ASN][1000 genomes]
rs72793973	1.00[ASN][1000 genomes]
rs72793974	1.00[ASN][1000 genomes]
rs72793975	1.00[ASN][1000 genomes]
rs72793976	1.00[ASN][1000 genomes]
rs72793977	1.00[ASN][1000 genomes]
rs72793978	1.00[ASN][1000 genomes]
rs72793979	1.00[ASN][1000 genomes]
rs72793981	1.00[ASN][1000 genomes]
rs72793982	1.00[ASN][1000 genomes]
rs72793983	1.00[ASN][1000 genomes]
rs72793985	1.00[ASN][1000 genomes]
rs72793986	1.00[ASN][1000 genomes]
rs72793990	1.00[ASN][1000 genomes]
rs72793991	1.00[ASN][1000 genomes]
rs72793992	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793994	1.00[ASN][1000 genomes]
rs72793999	1.00[ASN][1000 genomes]
rs72795808	1.00[ASN][1000 genomes]
rs72795809	1.00[ASN][1000 genomes]
rs72795811	1.00[ASN][1000 genomes]
rs72795813	1.00[ASN][1000 genomes]
rs72795817	1.00[ASN][1000 genomes]
rs72795819	1.00[ASN][1000 genomes]
rs72795820	1.00[ASN][1000 genomes]
rs72795825	1.00[ASN][1000 genomes]
rs72795826	1.00[ASN][1000 genomes]
rs72795833	1.00[ASN][1000 genomes]
rs72795834	1.00[ASN][1000 genomes]
rs72795835	1.00[ASN][1000 genomes]
rs72795838	1.00[ASN][1000 genomes]
rs72795840	1.00[ASN][1000 genomes]
rs72795845	1.00[ASN][1000 genomes]
rs72795846	1.00[ASN][1000 genomes]
rs72795848	1.00[ASN][1000 genomes]
rs72795849	1.00[ASN][1000 genomes]
rs72797856	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74126331	1.00[ASN][1000 genomes]
rs74126361	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126374	1.00[ASN][1000 genomes]
rs74126386	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126397	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126400	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126401	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126402	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129103	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129107	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74129109	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74129112	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74129113	0.96[AMR][1000 genomes]
rs7476089	1.00[ASN][1000 genomes]
rs7894269	0.83[AMR][1000 genomes]
rs7909349	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7919609	0.96[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26315200-26326400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:26317800-26322200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26317800-26322600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26319200-26325600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:26319600-26326600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:26319600-26326600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:26320200-26320400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links