Variant report
| Variant | rs72797856 |
|---|---|
| Chromosome Location | chr10:26219298-26219299 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11014866 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11014874 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11813672 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11816664 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11819262 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12258870 | 1.00[ASN][1000 genomes] |
| rs2222351 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3897758 | 0.95[EUR][1000 genomes] |
| rs4370835 | 0.95[EUR][1000 genomes] |
| rs57687518 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs59646929 | 0.95[EUR][1000 genomes] |
| rs7070437 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72789947 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72789954 | 0.95[EUR][1000 genomes] |
| rs72789957 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72789960 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72793209 | 0.91[EUR][1000 genomes] |
| rs72793210 | 0.91[EUR][1000 genomes] |
| rs72793214 | 0.91[EUR][1000 genomes] |
| rs72793215 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72793218 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs72793939 | 0.95[EUR][1000 genomes] |
| rs72793940 | 0.95[EUR][1000 genomes] |
| rs72793945 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72793992 | 0.95[EUR][1000 genomes] |
| rs74126361 | 0.94[EUR][1000 genomes] |
| rs74126386 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs74126397 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894974 | chr10:26028530-26322783 | Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1051756 | chr10:26092320-26277478 | Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26215400-26222400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
