Variant report

Variant	rs11014874
Chromosome Location	chr10:26236961-26236962
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26234625..26237519-chr10:26239131..26242343,3	K562	blood:

Variant related genes	Relation type
ENSG00000095777	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11014866	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813672	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814242	0.86[AFR][1000 genomes]
rs11816664	0.95[EUR][1000 genomes]
rs11819262	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245940	0.81[AFR][1000 genomes]
rs12258870	1.00[ASN][1000 genomes]
rs1546698	0.89[AFR][1000 genomes]
rs1546699	0.83[AFR][1000 genomes]
rs1546700	0.83[AFR][1000 genomes]
rs1591905	0.86[AFR][1000 genomes]
rs16926590	0.86[EUR][1000 genomes]
rs2222351	0.96[EUR][1000 genomes]
rs3897758	0.96[EUR][1000 genomes]
rs41279908	0.86[EUR][1000 genomes]
rs4370835	0.96[EUR][1000 genomes]
rs57687518	0.89[EUR][1000 genomes]
rs59646929	0.96[EUR][1000 genomes]
rs7069867	0.89[AFR][1000 genomes]
rs7070437	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787349	0.86[EUR][1000 genomes]
rs72787350	0.86[EUR][1000 genomes]
rs72789947	0.96[EUR][1000 genomes]
rs72789954	0.96[EUR][1000 genomes]
rs72789957	0.96[EUR][1000 genomes]
rs72789960	0.96[EUR][1000 genomes]
rs72793209	0.92[EUR][1000 genomes]
rs72793210	0.92[EUR][1000 genomes]
rs72793214	0.92[EUR][1000 genomes]
rs72793215	0.92[EUR][1000 genomes]
rs72793218	0.86[EUR][1000 genomes]
rs72793939	0.96[EUR][1000 genomes]
rs72793940	0.96[EUR][1000 genomes]
rs72793945	0.96[EUR][1000 genomes]
rs72793992	0.96[EUR][1000 genomes]
rs72797856	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126361	0.95[EUR][1000 genomes]
rs74126386	0.92[EUR][1000 genomes]
rs74126397	0.86[EUR][1000 genomes]
rs74126400	0.86[EUR][1000 genomes]
rs74126401	0.86[EUR][1000 genomes]
rs74126402	0.86[EUR][1000 genomes]
rs74129103	0.86[EUR][1000 genomes]
rs7911905	0.86[AFR][1000 genomes]
rs7918480	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26233600-26237000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26236200-26238400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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