Variant report

Variant	rs11813672
Chromosome Location	chr10:26203381-26203382
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11014866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014874	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812152	1.00[CHB][hapmap]
rs11812332	1.00[CHB][hapmap]
rs11812543	1.00[CHB][hapmap]
rs11813728	1.00[CHB][hapmap]
rs11816664	0.94[EUR][1000 genomes]
rs11818977	1.00[CHB][hapmap]
rs11819181	1.00[CHB][hapmap]
rs11819262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819744	1.00[CHB][hapmap]
rs12258870	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1521037	1.00[CHB][hapmap]
rs1521038	1.00[CHB][hapmap]
rs16926590	1.00[CHB][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs17666132	1.00[CHB][hapmap]
rs17666138	1.00[CHB][hapmap]
rs17666263	1.00[CHB][hapmap]
rs17738738	1.00[CHB][hapmap]
rs17738768	1.00[CHB][hapmap]
rs17738883	1.00[CHB][hapmap]
rs17738907	1.00[CHB][hapmap]
rs17738949	1.00[CHB][hapmap]
rs2185325	1.00[CHB][hapmap]
rs2222351	0.95[EUR][1000 genomes]
rs3897758	0.95[EUR][1000 genomes]
rs41454449	1.00[CHB][hapmap]
rs4370835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs57687518	0.88[EUR][1000 genomes]
rs59646929	0.95[EUR][1000 genomes]
rs7070437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789947	0.95[EUR][1000 genomes]
rs72789954	0.95[EUR][1000 genomes]
rs72789957	0.95[EUR][1000 genomes]
rs72789960	0.95[EUR][1000 genomes]
rs72793209	0.91[EUR][1000 genomes]
rs72793210	0.91[EUR][1000 genomes]
rs72793214	0.91[EUR][1000 genomes]
rs72793939	0.95[EUR][1000 genomes]
rs72793940	0.95[EUR][1000 genomes]
rs72793945	0.95[EUR][1000 genomes]
rs72793992	0.95[EUR][1000 genomes]
rs72797856	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126361	0.94[EUR][1000 genomes]
rs74126386	0.91[EUR][1000 genomes]
rs7476089	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26199600-26205600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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