Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:26104191-26104583	U87	brain:	n/a	n/a
2	KAP1	chr10:26104266-26106052	HEK293	kidney:	n/a	n/a
3	STAT3	chr10:26104226-26104426	MCF10A-Er-Src	breast:	n/a	chr10:26104347-26104358
4	STAT3	chr10:26104275-26104446	MCF10A-Er-Src	breast:	n/a	chr10:26104347-26104358

Variant related genes	Relation type
RNA5SP306	TF binding region

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11014873	1.00[CHB][hapmap]
rs12245237	1.00[CHB][hapmap]
rs12259899	1.00[CHB][hapmap]
rs2437383	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2437385	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2437387	0.85[EUR][1000 genomes]
rs2437398	0.83[EUR][1000 genomes]
rs2442857	1.00[ASN][1000 genomes]
rs2442858	1.00[ASN][1000 genomes]
rs2442861	1.00[ASN][1000 genomes]
rs2442862	1.00[ASN][1000 genomes]
rs2504187	1.00[ASN][1000 genomes]
rs2505428	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2505432	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs2505435	0.85[EUR][1000 genomes]
rs2505436	0.83[EUR][1000 genomes]
rs2505437	0.83[EUR][1000 genomes]
rs2505461	1.00[ASN][1000 genomes]
rs3006261	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6482521	1.00[CHB][hapmap]
rs6482522	1.00[CHB][hapmap]
rs7070437	1.00[CHB][hapmap]
rs7093785	1.00[CHB][hapmap]
rs872752	1.00[CHB][hapmap]
rs872753	1.00[CHB][hapmap]
rs872754	1.00[CHB][hapmap]
rs9299809	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9299810	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs946688	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26088200-26106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:26100400-26104600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:26101000-26104400	Weak transcription	Brain Germinal Matrix	brain
4	chr10:26102200-26105000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:26103800-26108400	Enhancers	Dnd41	blood
6	chr10:26104000-26105000	Enhancers	NH-A	brain
7	chr10:26104200-26106200	Enhancers	Pancreatic Islets	Pancreatic Islet

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