Variant report

Variant	rs7093785
Chromosome Location	chr10:26224460-26224461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10128298	0.82[CEU][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828904	1.00[ASN][1000 genomes]
rs10828905	1.00[ASN][1000 genomes]
rs11014734	1.00[ASN][1000 genomes]
rs11014799	1.00[ASN][1000 genomes]
rs11014865	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014867	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014875	0.83[YRI][hapmap]
rs11014890	0.83[YRI][hapmap]
rs11014909	0.83[YRI][hapmap]
rs11812332	1.00[CHB][hapmap]
rs11812752	1.00[ASN][1000 genomes]
rs11812817	1.00[CHB][hapmap]
rs11812818	1.00[CHB][hapmap]
rs11813250	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816237	1.00[CHB][hapmap]
rs11818246	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818641	1.00[ASN][1000 genomes]
rs12243371	1.00[YRI][hapmap]
rs12244769	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246082	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12250378	0.83[YRI][hapmap]
rs12252319	0.83[YRI][hapmap]
rs12259899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264665	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265873	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316407	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339802	0.88[YRI][hapmap]
rs1521037	1.00[CHB][hapmap]
rs16926494	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926502	0.83[YRI][hapmap]
rs17528260	1.00[ASN][1000 genomes]
rs17666634	1.00[ASN][1000 genomes]
rs17738073	1.00[ASN][1000 genomes]
rs17738672	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437382	1.00[ASN][1000 genomes]
rs2437383	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2437385	1.00[ASN][1000 genomes]
rs2437387	1.00[ASN][1000 genomes]
rs2437393	1.00[ASN][1000 genomes]
rs2437398	1.00[ASN][1000 genomes]
rs2437406	1.00[ASN][1000 genomes]
rs2437407	1.00[ASN][1000 genomes]
rs2437411	1.00[ASN][1000 genomes]
rs2437412	1.00[ASN][1000 genomes]
rs2437417	1.00[ASN][1000 genomes]
rs2437418	1.00[ASN][1000 genomes]
rs2437423	1.00[ASN][1000 genomes]
rs2442830	1.00[ASN][1000 genomes]
rs2442834	1.00[ASN][1000 genomes]
rs2442835	1.00[ASN][1000 genomes]
rs2442836	1.00[ASN][1000 genomes]
rs2442837	1.00[ASN][1000 genomes]
rs2442841	1.00[ASN][1000 genomes]
rs2442844	1.00[ASN][1000 genomes]
rs2442845	1.00[ASN][1000 genomes]
rs2442846	1.00[ASN][1000 genomes]
rs2442848	1.00[ASN][1000 genomes]
rs2505419	1.00[ASN][1000 genomes]
rs2505428	1.00[ASN][1000 genomes]
rs2505429	1.00[CHB][hapmap]
rs2505432	1.00[ASN][1000 genomes]
rs2505435	1.00[ASN][1000 genomes]
rs2505436	1.00[ASN][1000 genomes]
rs2505437	1.00[ASN][1000 genomes]
rs2505442	1.00[ASN][1000 genomes]
rs2505470	1.00[ASN][1000 genomes]
rs2505471	1.00[ASN][1000 genomes]
rs2505472	1.00[ASN][1000 genomes]
rs2505473	1.00[ASN][1000 genomes]
rs2505474	1.00[ASN][1000 genomes]
rs2505476	1.00[ASN][1000 genomes]
rs2505479	1.00[ASN][1000 genomes]
rs2505480	1.00[ASN][1000 genomes]
rs2505481	1.00[ASN][1000 genomes]
rs2505482	1.00[ASN][1000 genomes]
rs2505483	1.00[ASN][1000 genomes]
rs2505489	1.00[ASN][1000 genomes]
rs2505491	1.00[ASN][1000 genomes]
rs2505496	1.00[ASN][1000 genomes]
rs2505497	1.00[ASN][1000 genomes]
rs2505499	1.00[ASN][1000 genomes]
rs3006247	1.00[ASN][1000 genomes]
rs3006261	1.00[ASN][1000 genomes]
rs3006267	1.00[ASN][1000 genomes]
rs4370835	1.00[CHB][hapmap]
rs56091425	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56384418	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66470511	1.00[ASN][1000 genomes]
rs7070437	1.00[CHB][hapmap]
rs7073084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073224	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074259	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084069	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095361	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095669	1.00[ASN][1000 genomes]
rs7096963	1.00[ASN][1000 genomes]
rs72789911	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789916	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789918	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789921	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789927	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789932	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789935	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789936	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789937	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789941	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789943	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797835	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797838	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797849	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797851	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797853	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797855	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476089	1.00[CHB][hapmap]
rs7900700	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906568	1.00[ASN][1000 genomes]
rs7906569	1.00[ASN][1000 genomes]
rs7913203	0.83[YRI][hapmap]
rs7914207	0.83[YRI][hapmap]
rs7917417	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap]
rs872753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872754	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299809	1.00[ASN][1000 genomes]
rs9299810	1.00[ASN][1000 genomes]
rs9417455	1.00[ASN][1000 genomes]
rs946688	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9731088	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26222400-26224800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:26222400-26228000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:26223800-26224600	Active TSS	Brain Germinal Matrix	brain
4	chr10:26224000-26224600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
5	chr10:26224000-26224600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
6	chr10:26224200-26224600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:26224200-26224600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
8	chr10:26224200-26224600	Bivalent Enhancer	Primary B cells from cord blood	blood
9	chr10:26224200-26224600	Bivalent Enhancer	Fetal Lung	lung
10	chr10:26224200-26224800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:26224400-26224600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:26224400-26224600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr10:26224400-26224600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr10:26224400-26224600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:26224400-26224600	Bivalent Enhancer	Fetal Kidney	kidney
16	chr10:26224400-26224800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr10:26224400-26227000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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