Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10828918	0.83[AMR][1000 genomes]
rs10828919	0.82[YRI][hapmap]
rs10828929	0.81[YRI][hapmap]
rs10828930	0.83[AMR][1000 genomes]
rs10828931	0.81[YRI][hapmap]
rs10828934	0.81[YRI][hapmap]
rs11014873	0.81[YRI][hapmap]
rs11014879	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11014881	0.83[AMR][1000 genomes]
rs11014882	0.92[YRI][hapmap]
rs11014893	0.81[YRI][hapmap]
rs11014897	0.93[YRI][hapmap]
rs11014909	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814511	0.83[AMR][1000 genomes]
rs11819023	0.83[AMR][1000 genomes]
rs12243371	0.82[YRI][hapmap]
rs12246082	0.83[YRI][hapmap]
rs12247532	0.83[AMR][1000 genomes]
rs12252319	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12257431	0.89[YRI][hapmap]
rs12259899	0.87[YRI][hapmap]
rs12260381	0.83[AMR][1000 genomes]
rs12261043	0.82[YRI][hapmap]
rs12261183	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263132	0.81[YRI][hapmap]
rs12264399	0.83[AMR][1000 genomes]
rs12265482	0.83[AMR][1000 genomes]
rs12268406	0.81[YRI][hapmap]
rs16926512	0.81[YRI][hapmap]
rs6482521	0.81[YRI][hapmap]
rs6482527	0.81[YRI][hapmap]
rs7089743	0.81[YRI][hapmap]
rs7093785	0.83[YRI][hapmap]
rs7895308	0.81[YRI][hapmap]
rs7896360	0.83[AMR][1000 genomes]
rs7903859	0.84[YRI][hapmap]
rs7905996	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7913203	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916305	0.81[YRI][hapmap]
rs946688	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26264400-26289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:26284600-26300800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26285400-26292800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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