Variant report

Variant	rs12246082
Chromosome Location	chr10:26240340-26240341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10128298	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs11014867	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs11014873	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs11014875	0.83[YRI][hapmap]
rs11014890	0.83[YRI][hapmap]
rs11014909	0.83[YRI][hapmap]
rs12243371	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12245237	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs12250378	0.83[YRI][hapmap]
rs12252319	0.83[YRI][hapmap]
rs12259899	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12264665	0.82[AFR][1000 genomes]
rs1316407	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs1339802	0.88[YRI][hapmap]
rs16926502	0.83[YRI][hapmap]
rs56091425	0.82[AFR][1000 genomes]
rs6482521	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs6482522	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs7093785	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs72789927	0.82[AFR][1000 genomes]
rs7900700	0.88[AFR][1000 genomes]
rs7913203	0.83[YRI][hapmap]
rs7914207	0.83[YRI][hapmap]
rs872752	0.94[YRI][hapmap]
rs872753	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs872754	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs946688	0.93[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26237000-26240800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26240200-26241400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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