Variant report

Variant	rs10828904
Chromosome Location	chr10:26193353-26193354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10128298	1.00[ASN][1000 genomes]
rs10828905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014734	1.00[ASN][1000 genomes]
rs11014799	1.00[ASN][1000 genomes]
rs11014865	1.00[ASN][1000 genomes]
rs11014867	1.00[ASN][1000 genomes]
rs11014873	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11812152	0.83[CEU][hapmap]
rs11812332	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11812543	0.83[CEU][hapmap]
rs11812752	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812817	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11812818	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11813250	1.00[ASN][1000 genomes]
rs11813728	0.82[CEU][hapmap]
rs11813730	0.81[CEU][hapmap]
rs11816237	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11818246	1.00[ASN][1000 genomes]
rs11818587	0.83[CEU][hapmap]
rs11818641	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818977	0.83[CEU][hapmap]
rs11819181	0.83[CEU][hapmap]
rs11819744	0.83[CEU][hapmap]
rs12244769	1.00[ASN][1000 genomes]
rs12245237	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12258870	0.82[CEU][hapmap]
rs12259899	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12264665	1.00[ASN][1000 genomes]
rs12265873	1.00[ASN][1000 genomes]
rs1316407	1.00[ASN][1000 genomes]
rs1521037	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs1521038	0.83[CEU][hapmap]
rs16926494	1.00[ASN][1000 genomes]
rs17528260	1.00[ASN][1000 genomes]
rs17666132	0.82[CEU][hapmap]
rs17666138	0.83[CEU][hapmap]
rs17666263	0.83[CEU][hapmap]
rs17738073	1.00[ASN][1000 genomes]
rs17738672	1.00[ASN][1000 genomes]
rs17738738	0.83[CEU][hapmap]
rs17738768	0.83[CEU][hapmap]
rs17738883	0.90[CEU][hapmap]
rs17738907	0.83[CEU][hapmap]
rs17738937	0.83[CEU][hapmap]
rs17738949	0.83[CEU][hapmap]
rs2437382	1.00[ASN][1000 genomes]
rs2437383	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2437385	1.00[ASN][1000 genomes]
rs2437387	1.00[ASN][1000 genomes]
rs2437393	1.00[ASN][1000 genomes]
rs2437398	1.00[ASN][1000 genomes]
rs2437406	1.00[ASN][1000 genomes]
rs2437407	1.00[ASN][1000 genomes]
rs2437411	1.00[ASN][1000 genomes]
rs2437412	1.00[ASN][1000 genomes]
rs2437417	1.00[ASN][1000 genomes]
rs2437418	1.00[ASN][1000 genomes]
rs2437423	1.00[ASN][1000 genomes]
rs2442830	1.00[ASN][1000 genomes]
rs2442834	1.00[ASN][1000 genomes]
rs2442835	1.00[ASN][1000 genomes]
rs2442836	1.00[ASN][1000 genomes]
rs2442837	1.00[ASN][1000 genomes]
rs2442841	1.00[ASN][1000 genomes]
rs2442844	1.00[ASN][1000 genomes]
rs2442845	1.00[ASN][1000 genomes]
rs2442846	1.00[ASN][1000 genomes]
rs2442848	1.00[ASN][1000 genomes]
rs2442850	1.00[ASN][1000 genomes]
rs2442852	1.00[ASN][1000 genomes]
rs2442853	1.00[ASN][1000 genomes]
rs2505419	1.00[ASN][1000 genomes]
rs2505428	1.00[ASN][1000 genomes]
rs2505429	1.00[CHB][hapmap]
rs2505432	1.00[ASN][1000 genomes]
rs2505435	1.00[ASN][1000 genomes]
rs2505436	1.00[ASN][1000 genomes]
rs2505437	1.00[ASN][1000 genomes]
rs2505442	1.00[ASN][1000 genomes]
rs2505464	1.00[ASN][1000 genomes]
rs2505470	1.00[ASN][1000 genomes]
rs2505471	1.00[ASN][1000 genomes]
rs2505472	1.00[ASN][1000 genomes]
rs2505473	1.00[ASN][1000 genomes]
rs2505474	1.00[ASN][1000 genomes]
rs2505476	1.00[ASN][1000 genomes]
rs2505479	1.00[ASN][1000 genomes]
rs2505480	1.00[ASN][1000 genomes]
rs2505481	1.00[ASN][1000 genomes]
rs2505482	1.00[ASN][1000 genomes]
rs2505483	1.00[ASN][1000 genomes]
rs2505489	1.00[ASN][1000 genomes]
rs2505491	1.00[ASN][1000 genomes]
rs2505496	1.00[ASN][1000 genomes]
rs2505497	1.00[ASN][1000 genomes]
rs2505499	1.00[ASN][1000 genomes]
rs2923024	1.00[ASN][1000 genomes]
rs3006247	1.00[ASN][1000 genomes]
rs3006261	1.00[ASN][1000 genomes]
rs3006267	1.00[ASN][1000 genomes]
rs41454449	0.83[CEU][hapmap]
rs4370835	1.00[CHB][hapmap]
rs56091425	1.00[ASN][1000 genomes]
rs56384418	1.00[ASN][1000 genomes]
rs6482521	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6482522	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs66470511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070437	1.00[CHB][hapmap]
rs7073224	1.00[ASN][1000 genomes]
rs7074259	1.00[ASN][1000 genomes]
rs7084069	1.00[ASN][1000 genomes]
rs7093785	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7095361	1.00[ASN][1000 genomes]
rs7095669	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096963	1.00[ASN][1000 genomes]
rs72789911	1.00[ASN][1000 genomes]
rs72789916	1.00[ASN][1000 genomes]
rs72789918	1.00[ASN][1000 genomes]
rs72789921	1.00[ASN][1000 genomes]
rs72789927	1.00[ASN][1000 genomes]
rs72789932	1.00[ASN][1000 genomes]
rs72789935	1.00[ASN][1000 genomes]
rs72789936	1.00[ASN][1000 genomes]
rs72789937	1.00[ASN][1000 genomes]
rs72789941	1.00[ASN][1000 genomes]
rs72789943	1.00[ASN][1000 genomes]
rs72797835	1.00[ASN][1000 genomes]
rs72797838	1.00[ASN][1000 genomes]
rs72797849	1.00[ASN][1000 genomes]
rs72797851	1.00[ASN][1000 genomes]
rs72797853	1.00[ASN][1000 genomes]
rs72797855	1.00[ASN][1000 genomes]
rs7476089	1.00[CHB][hapmap]
rs7900700	1.00[ASN][1000 genomes]
rs7906568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917417	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs872752	1.00[CHB][hapmap]
rs872753	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs872754	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9299809	1.00[ASN][1000 genomes]
rs9299810	1.00[ASN][1000 genomes]
rs9417455	1.00[ASN][1000 genomes]
rs946688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9731088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26188600-26197000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:26189600-26193800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:26190600-26196400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:26190800-26196200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:26191400-26193800	Enhancers	Primary B cells from cord blood	blood
6	chr10:26191600-26194400	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:26192600-26197400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:26192800-26196000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:26193200-26193800	Enhancers	HUES6 Cell Line	embryonic stem cell

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