Variant report

Variant	rs2505479
Chromosome Location	chr10:26057504-26057505
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10128298	1.00[ASN][1000 genomes]
rs10828904	1.00[ASN][1000 genomes]
rs10828905	1.00[ASN][1000 genomes]
rs11014734	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014799	1.00[ASN][1000 genomes]
rs11014865	1.00[ASN][1000 genomes]
rs11014867	1.00[ASN][1000 genomes]
rs11014873	1.00[ASN][1000 genomes]
rs11812752	1.00[ASN][1000 genomes]
rs11818246	1.00[ASN][1000 genomes]
rs11818641	1.00[ASN][1000 genomes]
rs12244769	1.00[ASN][1000 genomes]
rs12245237	1.00[ASN][1000 genomes]
rs12259899	1.00[ASN][1000 genomes]
rs12265873	1.00[ASN][1000 genomes]
rs1316407	1.00[ASN][1000 genomes]
rs17528260	1.00[ASN][1000 genomes]
rs17738073	1.00[ASN][1000 genomes]
rs2437382	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437383	1.00[ASN][1000 genomes]
rs2437385	1.00[ASN][1000 genomes]
rs2437387	1.00[ASN][1000 genomes]
rs2437393	1.00[ASN][1000 genomes]
rs2437398	1.00[ASN][1000 genomes]
rs2437406	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437407	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437411	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437412	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437417	1.00[ASN][1000 genomes]
rs2437418	1.00[ASN][1000 genomes]
rs2437423	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2442830	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442834	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442835	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442836	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442837	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442841	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442844	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442845	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442846	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442848	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442850	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442852	1.00[ASN][1000 genomes]
rs2442853	1.00[ASN][1000 genomes]
rs2505419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505428	1.00[ASN][1000 genomes]
rs2505432	1.00[ASN][1000 genomes]
rs2505435	1.00[ASN][1000 genomes]
rs2505436	1.00[ASN][1000 genomes]
rs2505437	1.00[ASN][1000 genomes]
rs2505442	1.00[ASN][1000 genomes]
rs2505464	1.00[ASN][1000 genomes]
rs2505470	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505471	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505472	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505473	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505474	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505476	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505481	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505483	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505489	1.00[ASN][1000 genomes]
rs2505491	1.00[ASN][1000 genomes]
rs2505496	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505497	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505499	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923024	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006247	1.00[ASN][1000 genomes]
rs3006261	1.00[ASN][1000 genomes]
rs3006267	1.00[ASN][1000 genomes]
rs56091425	1.00[ASN][1000 genomes]
rs56384418	1.00[ASN][1000 genomes]
rs6482521	1.00[ASN][1000 genomes]
rs6482522	1.00[ASN][1000 genomes]
rs66470511	1.00[ASN][1000 genomes]
rs7073224	1.00[ASN][1000 genomes]
rs7074259	1.00[ASN][1000 genomes]
rs7084069	1.00[ASN][1000 genomes]
rs7093785	1.00[ASN][1000 genomes]
rs7095361	1.00[ASN][1000 genomes]
rs7095669	1.00[ASN][1000 genomes]
rs7096963	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789911	1.00[ASN][1000 genomes]
rs72789916	1.00[ASN][1000 genomes]
rs72789918	1.00[ASN][1000 genomes]
rs72789921	1.00[ASN][1000 genomes]
rs72797835	1.00[ASN][1000 genomes]
rs72797838	1.00[ASN][1000 genomes]
rs72797849	1.00[ASN][1000 genomes]
rs72797851	1.00[ASN][1000 genomes]
rs72797853	1.00[ASN][1000 genomes]
rs72797855	1.00[ASN][1000 genomes]
rs7906568	1.00[ASN][1000 genomes]
rs7906569	1.00[ASN][1000 genomes]
rs7917417	1.00[ASN][1000 genomes]
rs872753	1.00[ASN][1000 genomes]
rs872754	1.00[ASN][1000 genomes]
rs9299806	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9299809	1.00[ASN][1000 genomes]
rs9299810	1.00[ASN][1000 genomes]
rs9417455	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946688	1.00[ASN][1000 genomes]
rs9731088	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26056200-26057600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:26056200-26065600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:26056800-26057600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:26056800-26063800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:26056800-26064800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:26057000-26064000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:26057200-26058200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:26057200-26065400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:26057400-26057600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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