Variant report

Variant	rs9299806
Chromosome Location	chr10:26043503-26043504
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11014734	0.82[EUR][1000 genomes]
rs2437382	0.84[EUR][1000 genomes]
rs2437406	0.84[AMR][1000 genomes]
rs2437407	0.84[AMR][1000 genomes]
rs2437412	0.84[AMR][1000 genomes]
rs2442830	0.84[AMR][1000 genomes]
rs2442834	0.84[AMR][1000 genomes]
rs2442835	0.84[AMR][1000 genomes]
rs2442836	0.84[AMR][1000 genomes]
rs2442837	0.84[AMR][1000 genomes]
rs2442844	0.82[EUR][1000 genomes]
rs2442845	0.93[EUR][1000 genomes]
rs2442846	0.93[EUR][1000 genomes]
rs2442848	0.93[EUR][1000 genomes]
rs2442850	0.93[EUR][1000 genomes]
rs2505419	0.83[EUR][1000 genomes]
rs2505470	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2505471	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2505472	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2505473	0.93[EUR][1000 genomes]
rs2505474	0.93[EUR][1000 genomes]
rs2505476	0.93[EUR][1000 genomes]
rs2505479	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2505480	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2505481	0.82[EUR][1000 genomes]
rs2505482	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2505483	0.82[EUR][1000 genomes]
rs2505496	0.84[AMR][1000 genomes]
rs2505497	0.84[AMR][1000 genomes]
rs2505499	0.84[AMR][1000 genomes]
rs2923024	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7096963	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9417455	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26038200-26046400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26038800-26044800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26041000-26045000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:26042400-26043600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:26042800-26051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:26043000-26043600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:26043200-26046400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:26043200-26046600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:26043200-26046800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:26043200-26057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:26043400-26045200	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links