Variant report

Variant	rs2505472
Chromosome Location	chr10:26051563-26051564
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10128298	1.00[ASN][1000 genomes]
rs10828904	1.00[ASN][1000 genomes]
rs10828905	1.00[ASN][1000 genomes]
rs11014734	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014799	1.00[ASN][1000 genomes]
rs11014865	1.00[ASN][1000 genomes]
rs11014867	1.00[ASN][1000 genomes]
rs11812752	1.00[ASN][1000 genomes]
rs11818246	1.00[ASN][1000 genomes]
rs11818641	1.00[ASN][1000 genomes]
rs12244769	1.00[ASN][1000 genomes]
rs12245237	1.00[ASN][1000 genomes]
rs12265873	1.00[ASN][1000 genomes]
rs1316407	1.00[ASN][1000 genomes]
rs17528260	1.00[ASN][1000 genomes]
rs17738073	1.00[ASN][1000 genomes]
rs2437382	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437383	1.00[ASN][1000 genomes]
rs2437385	1.00[ASN][1000 genomes]
rs2437387	1.00[ASN][1000 genomes]
rs2437393	1.00[ASN][1000 genomes]
rs2437398	1.00[ASN][1000 genomes]
rs2437406	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437407	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437411	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437412	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437417	1.00[ASN][1000 genomes]
rs2437418	1.00[ASN][1000 genomes]
rs2437423	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2442830	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2442834	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442835	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442836	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442837	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442841	1.00[ASN][1000 genomes]
rs2442844	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442845	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442846	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442848	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442850	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442852	1.00[ASN][1000 genomes]
rs2442853	1.00[ASN][1000 genomes]
rs2505419	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505428	1.00[ASN][1000 genomes]
rs2505432	1.00[ASN][1000 genomes]
rs2505435	1.00[ASN][1000 genomes]
rs2505436	1.00[ASN][1000 genomes]
rs2505437	1.00[ASN][1000 genomes]
rs2505442	1.00[ASN][1000 genomes]
rs2505464	1.00[ASN][1000 genomes]
rs2505470	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505471	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505473	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505474	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505476	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505479	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505480	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505481	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505482	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505483	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505489	1.00[ASN][1000 genomes]
rs2505491	1.00[ASN][1000 genomes]
rs2505496	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505497	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505499	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923024	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006247	1.00[ASN][1000 genomes]
rs3006261	1.00[ASN][1000 genomes]
rs3006267	1.00[ASN][1000 genomes]
rs6482521	1.00[ASN][1000 genomes]
rs6482522	1.00[ASN][1000 genomes]
rs66470511	1.00[ASN][1000 genomes]
rs7073224	1.00[ASN][1000 genomes]
rs7074259	1.00[ASN][1000 genomes]
rs7084069	1.00[ASN][1000 genomes]
rs7093785	1.00[ASN][1000 genomes]
rs7095361	1.00[ASN][1000 genomes]
rs7095669	1.00[ASN][1000 genomes]
rs7096963	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789911	1.00[ASN][1000 genomes]
rs72789916	1.00[ASN][1000 genomes]
rs72797835	1.00[ASN][1000 genomes]
rs72797838	1.00[ASN][1000 genomes]
rs72797849	1.00[ASN][1000 genomes]
rs72797851	1.00[ASN][1000 genomes]
rs72797853	1.00[ASN][1000 genomes]
rs72797855	1.00[ASN][1000 genomes]
rs7906568	1.00[ASN][1000 genomes]
rs7906569	1.00[ASN][1000 genomes]
rs7917417	1.00[ASN][1000 genomes]
rs872753	1.00[ASN][1000 genomes]
rs872754	1.00[ASN][1000 genomes]
rs9299806	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9299809	1.00[ASN][1000 genomes]
rs9299810	1.00[ASN][1000 genomes]
rs9417455	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946688	1.00[ASN][1000 genomes]
rs9731088	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26043200-26057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26047600-26054400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:26051000-26051600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:26051000-26055600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:26051200-26053400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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