Variant report
| Variant | rs7905635 |
|---|---|
| Chromosome Location | chr10:26287625-26287626 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10128266 | 1.00[AMR][1000 genomes] |
| rs10128512 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10828903 | 1.00[AMR][1000 genomes] |
| rs10828918 | 0.81[YRI][hapmap] |
| rs10828930 | 0.83[YRI][hapmap] |
| rs11014826 | 1.00[AMR][1000 genomes] |
| rs11014835 | 1.00[AMR][1000 genomes] |
| rs11014836 | 1.00[AMR][1000 genomes] |
| rs11014838 | 1.00[AMR][1000 genomes] |
| rs11014843 | 1.00[AMR][1000 genomes] |
| rs11014844 | 1.00[AMR][1000 genomes] |
| rs11014858 | 1.00[AMR][1000 genomes] |
| rs11014915 | 0.83[YRI][hapmap] |
| rs11014926 | 0.87[YRI][hapmap] |
| rs11814511 | 0.83[YRI][hapmap] |
| rs12249093 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12251038 | 1.00[AMR][1000 genomes] |
| rs12252281 | 0.91[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12254587 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12255497 | 1.00[AMR][1000 genomes] |
| rs12258905 | 1.00[AMR][1000 genomes] |
| rs12260850 | 1.00[AMR][1000 genomes] |
| rs12267363 | 1.00[AMR][1000 genomes] |
| rs58289791 | 1.00[AMR][1000 genomes] |
| rs7073840 | 1.00[AMR][1000 genomes] |
| rs7086945 | 1.00[AMR][1000 genomes] |
| rs7086963 | 1.00[AMR][1000 genomes] |
| rs7087106 | 1.00[AMR][1000 genomes] |
| rs7089023 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7093036 | 1.00[AMR][1000 genomes] |
| rs7098026 | 0.80[YRI][hapmap] |
| rs7099128 | 1.00[AMR][1000 genomes] |
| rs7099929 | 1.00[AMR][1000 genomes] |
| rs73610364 | 1.00[AMR][1000 genomes] |
| rs73610365 | 1.00[AMR][1000 genomes] |
| rs7896360 | 0.83[YRI][hapmap] |
| rs7904403 | 1.00[AMR][1000 genomes] |
| rs7911886 | 1.00[AMR][1000 genomes] |
| rs7924004 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894974 | chr10:26028530-26322783 | Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv1792417 | chr10:26263695-26395038 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26264400-26289600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr10:26284600-26300800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 3 | chr10:26285400-26292800 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
