Variant report

Variant	rs12254587
Chromosome Location	chr10:26361803-26361804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10128266	1.00[AMR][1000 genomes]
rs10128512	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11014858	1.00[AMR][1000 genomes]
rs11813048	1.00[AMR][1000 genomes]
rs12249093	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12252281	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs12255497	1.00[AMR][1000 genomes]
rs12256786	0.88[AFR][1000 genomes]
rs12258905	1.00[AMR][1000 genomes]
rs12260850	1.00[AMR][1000 genomes]
rs12267363	1.00[AMR][1000 genomes]
rs7073840	1.00[AMR][1000 genomes]
rs7089023	1.00[AMR][1000 genomes]
rs7093036	1.00[AMR][1000 genomes]
rs7099929	1.00[AMR][1000 genomes]
rs7904403	1.00[AMR][1000 genomes]
rs7905635	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7924004	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26358600-26362400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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