Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10128266	0.85[AFR][1000 genomes]
rs10128512	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10828903	0.83[AFR][1000 genomes]
rs10828918	0.81[YRI][hapmap]
rs10828930	0.83[YRI][hapmap]
rs11014843	0.83[AFR][1000 genomes]
rs11014844	0.83[AFR][1000 genomes]
rs11014858	0.85[AFR][1000 genomes]
rs11014915	0.83[YRI][hapmap]
rs11014916	0.83[YRI][hapmap]
rs11014926	0.87[YRI][hapmap]
rs11814511	0.83[YRI][hapmap]
rs11819023	0.83[YRI][hapmap]
rs12247532	0.83[YRI][hapmap]
rs12249093	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12252281	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs12254587	1.00[YRI][hapmap]
rs12255497	0.88[AFR][1000 genomes]
rs12258905	0.81[AFR][1000 genomes]
rs12260850	0.85[AFR][1000 genomes]
rs12264399	0.83[YRI][hapmap]
rs12265482	0.83[YRI][hapmap]
rs12267363	0.85[AFR][1000 genomes]
rs7073840	0.85[AFR][1000 genomes]
rs7085644	0.83[YRI][hapmap]
rs7086963	0.83[AFR][1000 genomes]
rs7087106	0.83[AFR][1000 genomes]
rs7089023	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs7093036	0.88[AFR][1000 genomes]
rs7098026	0.80[YRI][hapmap]
rs7099929	0.85[AFR][1000 genomes]
rs73610365	0.83[AFR][1000 genomes]
rs7896360	0.83[YRI][hapmap]
rs7905635	1.00[YRI][hapmap]
rs7911886	0.83[AFR][1000 genomes]
rs7924004	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26197400-26201800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:26199000-26199600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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