Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10828902	0.89[EUR][1000 genomes]
rs11014914	0.85[GIH][hapmap]
rs11014982	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11818977	0.85[GIH][hapmap]
rs11819181	0.85[GIH][hapmap]
rs16926523	0.84[LWK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs17666132	0.85[GIH][hapmap]
rs17666138	0.85[GIH][hapmap]
rs17738768	0.85[GIH][hapmap]
rs17738949	0.85[GIH][hapmap]
rs33947968	0.87[EUR][1000 genomes]
rs34067308	0.98[EUR][1000 genomes]
rs35010955	0.98[EUR][1000 genomes]
rs41314631	0.82[EUR][1000 genomes]
rs41314633	0.98[EUR][1000 genomes]
rs41454449	0.85[GIH][hapmap]
rs56077277	0.82[EUR][1000 genomes]
rs56210104	0.98[EUR][1000 genomes]
rs56296397	0.84[EUR][1000 genomes]
rs56981377	0.85[EUR][1000 genomes]
rs58373777	0.89[EUR][1000 genomes]
rs73610362	0.89[EUR][1000 genomes]
rs73610363	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26302400-26310200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26304000-26313200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26306000-26313600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:26306000-26314200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:26306200-26314600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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