Variant report

Variant	rs16926523
Chromosome Location	chr10:26294828-26294829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12249941	1.00[EUR][1000 genomes]
rs16926634	1.00[EUR][1000 genomes]
rs16926640	1.00[MEX][hapmap]
rs1934449	0.84[LWK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs57059254	1.00[EUR][1000 genomes]
rs59875564	1.00[EUR][1000 genomes]
rs61322866	1.00[EUR][1000 genomes]
rs7075995	1.00[EUR][1000 genomes]
rs7085234	0.85[AFR][1000 genomes]
rs7085573	0.85[AFR][1000 genomes]
rs7090388	1.00[EUR][1000 genomes]
rs7476345	1.00[EUR][1000 genomes]
rs7896526	0.82[AFR][1000 genomes]
rs7896541	1.00[EUR][1000 genomes]
rs7897279	1.00[EUR][1000 genomes]
rs7924051	0.85[AFR][1000 genomes]
rs9943382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
PR interval	23534349	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26284600-26300800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26293600-26295200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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