Variant report
| Variant | rs16926634 |
|---|---|
| Chromosome Location | chr10:26470969-26470970 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:26465564..26468022-chr10:26468180..26471096,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10508716 | 1.00[EUR][1000 genomes] |
| rs11015010 | 1.00[EUR][1000 genomes] |
| rs12253114 | 1.00[EUR][1000 genomes] |
| rs16926523 | 1.00[EUR][1000 genomes] |
| rs16926637 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16926866 | 1.00[EUR][1000 genomes] |
| rs57059254 | 1.00[EUR][1000 genomes] |
| rs61322866 | 1.00[EUR][1000 genomes] |
| rs7068224 | 1.00[EUR][1000 genomes] |
| rs74126456 | 1.00[EUR][1000 genomes] |
| rs74126457 | 1.00[EUR][1000 genomes] |
| rs74126459 | 1.00[EUR][1000 genomes] |
| rs74126460 | 1.00[EUR][1000 genomes] |
| rs74126461 | 1.00[EUR][1000 genomes] |
| rs74126462 | 1.00[EUR][1000 genomes] |
| rs74126465 | 1.00[EUR][1000 genomes] |
| rs74126466 | 1.00[EUR][1000 genomes] |
| rs7476345 | 1.00[EUR][1000 genomes] |
| rs7897279 | 1.00[EUR][1000 genomes] |
| rs7922748 | 1.00[EUR][1000 genomes] |
| rs8190585 | 1.00[EUR][1000 genomes] |
| rs8190593 | 1.00[EUR][1000 genomes] |
| rs8190689 | 1.00[EUR][1000 genomes] |
| rs8190714 | 1.00[EUR][1000 genomes] |
| rs8190720 | 1.00[EUR][1000 genomes] |
| rs8190807 | 1.00[EUR][1000 genomes] |
| rs8190815 | 1.00[EUR][1000 genomes] |
| rs928198 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26440800-26473400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr10:26464600-26478000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
