Variant report
| Variant | rs74126457 |
|---|---|
| Chromosome Location | chr10:26613019-26613020 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:26608523..26610420-chr10:26610940..26613884,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10508716 | 1.00[EUR][1000 genomes] |
| rs11015010 | 1.00[EUR][1000 genomes] |
| rs12253114 | 1.00[EUR][1000 genomes] |
| rs16926634 | 1.00[EUR][1000 genomes] |
| rs16926866 | 1.00[EUR][1000 genomes] |
| rs2992289 | 1.00[EUR][1000 genomes] |
| rs2992292 | 1.00[EUR][1000 genomes] |
| rs3006774 | 1.00[EUR][1000 genomes] |
| rs3006775 | 1.00[EUR][1000 genomes] |
| rs3006776 | 1.00[EUR][1000 genomes] |
| rs3006780 | 1.00[EUR][1000 genomes] |
| rs55901799 | 1.00[EUR][1000 genomes] |
| rs56095557 | 1.00[EUR][1000 genomes] |
| rs57059254 | 1.00[EUR][1000 genomes] |
| rs59739980 | 1.00[EUR][1000 genomes] |
| rs60209964 | 1.00[EUR][1000 genomes] |
| rs61322866 | 1.00[EUR][1000 genomes] |
| rs7068224 | 1.00[EUR][1000 genomes] |
| rs74126456 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74126459 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74126460 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74126461 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74126462 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74126465 | 1.00[EUR][1000 genomes] |
| rs74126466 | 1.00[EUR][1000 genomes] |
| rs74128332 | 1.00[EUR][1000 genomes] |
| rs74128333 | 1.00[EUR][1000 genomes] |
| rs74128337 | 1.00[EUR][1000 genomes] |
| rs7897279 | 1.00[EUR][1000 genomes] |
| rs7914319 | 1.00[EUR][1000 genomes] |
| rs7922748 | 1.00[EUR][1000 genomes] |
| rs8190585 | 1.00[EUR][1000 genomes] |
| rs8190593 | 1.00[EUR][1000 genomes] |
| rs8190689 | 1.00[EUR][1000 genomes] |
| rs8190714 | 1.00[EUR][1000 genomes] |
| rs8190720 | 1.00[EUR][1000 genomes] |
| rs8190807 | 1.00[EUR][1000 genomes] |
| rs8190815 | 1.00[EUR][1000 genomes] |
| rs928198 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26612000-26621600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
