Variant report

Variant	rs3006780
Chromosome Location	chr10:26681981-26681982
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10508716	1.00[EUR][1000 genomes]
rs11015010	1.00[EUR][1000 genomes]
rs12253114	1.00[EUR][1000 genomes]
rs16926866	1.00[EUR][1000 genomes]
rs28375710	1.00[EUR][1000 genomes]
rs2992289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2992292	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901799	1.00[EUR][1000 genomes]
rs56095557	1.00[EUR][1000 genomes]
rs56723895	1.00[EUR][1000 genomes]
rs57722155	1.00[EUR][1000 genomes]
rs59565472	1.00[EUR][1000 genomes]
rs59739980	1.00[EUR][1000 genomes]
rs60209964	1.00[EUR][1000 genomes]
rs61167184	1.00[EUR][1000 genomes]
rs61603511	1.00[EUR][1000 genomes]
rs7068224	1.00[EUR][1000 genomes]
rs74126456	1.00[EUR][1000 genomes]
rs74126457	1.00[EUR][1000 genomes]
rs74126459	1.00[EUR][1000 genomes]
rs74126460	1.00[EUR][1000 genomes]
rs74126461	1.00[EUR][1000 genomes]
rs74126462	1.00[EUR][1000 genomes]
rs74126465	1.00[EUR][1000 genomes]
rs74126466	1.00[EUR][1000 genomes]
rs74128332	1.00[EUR][1000 genomes]
rs74128333	1.00[EUR][1000 genomes]
rs74128337	1.00[EUR][1000 genomes]
rs74128351	1.00[EUR][1000 genomes]
rs74128352	1.00[EUR][1000 genomes]
rs74128357	1.00[EUR][1000 genomes]
rs74128358	1.00[EUR][1000 genomes]
rs74128359	1.00[EUR][1000 genomes]
rs7914319	1.00[EUR][1000 genomes]
rs7922748	1.00[EUR][1000 genomes]
rs8190689	1.00[EUR][1000 genomes]
rs8190714	1.00[EUR][1000 genomes]
rs8190720	1.00[EUR][1000 genomes]
rs8190807	1.00[EUR][1000 genomes]
rs8190815	1.00[EUR][1000 genomes]
rs928198	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2760104	chr10:26679548-26693124	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26681400-26682000	Enhancers	Fetal Thymus	thymus
2	chr10:26681600-26682200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:26681600-26688200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:26681600-26694200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:26681800-26682000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:26681800-26682200	Enhancers	Monocytes-CD14+_RO01746	blood

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