Variant report

Variant	rs59565472
Chromosome Location	chr10:26844237-26844238
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2018208	1.00[EUR][1000 genomes]
rs28375710	1.00[EUR][1000 genomes]
rs2992289	1.00[EUR][1000 genomes]
rs2992292	1.00[EUR][1000 genomes]
rs3006774	1.00[EUR][1000 genomes]
rs3006775	1.00[EUR][1000 genomes]
rs3006776	1.00[EUR][1000 genomes]
rs3006780	1.00[EUR][1000 genomes]
rs55901799	1.00[EUR][1000 genomes]
rs56095557	1.00[EUR][1000 genomes]
rs56723895	1.00[EUR][1000 genomes]
rs57722155	1.00[EUR][1000 genomes]
rs59739980	1.00[EUR][1000 genomes]
rs60209964	1.00[EUR][1000 genomes]
rs61167184	1.00[EUR][1000 genomes]
rs61603511	1.00[EUR][1000 genomes]
rs74128332	1.00[EUR][1000 genomes]
rs74128333	1.00[EUR][1000 genomes]
rs74128337	1.00[EUR][1000 genomes]
rs74128351	1.00[EUR][1000 genomes]
rs74128352	1.00[EUR][1000 genomes]
rs74128357	1.00[EUR][1000 genomes]
rs74128358	1.00[EUR][1000 genomes]
rs74128359	1.00[EUR][1000 genomes]
rs7914319	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26820600-26844600	Weak transcription	Pancreas	Pancrea
3	chr10:26830000-26845000	Strong transcription	Primary hematopoietic stem cells	blood
4	chr10:26831000-26844600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:26834800-26858400	Strong transcription	Dnd41	blood
6	chr10:26836000-26844400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:26837800-26844600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:26839200-26847000	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr10:26839400-26844400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:26839400-26844800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:26839400-26854200	Strong transcription	Primary T cells from cord blood	blood
12	chr10:26839600-26844600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr10:26839800-26845000	Strong transcription	Primary B cells from cord blood	blood
15	chr10:26839800-26845000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:26840000-26844400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:26840000-26850600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:26840000-26860000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:26840200-26855200	Weak transcription	Placenta	Placenta
21	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:26840400-26844600	Weak transcription	Esophagus	oesophagus
23	chr10:26840400-26849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:26840600-26844600	Strong transcription	Thymus	Thymus
25	chr10:26840600-26845600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:26841600-26844600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:26841800-26844600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:26841800-26846000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:26843200-26846400	Genic enhancers	Fetal Thymus	thymus
30	chr10:26843200-26849000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:26843200-26849000	Weak transcription	Spleen	Spleen
32	chr10:26843200-26849600	Weak transcription	Lung	lung
33	chr10:26843400-26844600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:26843400-26844600	Weak transcription	Adipose Nuclei	Adipose
35	chr10:26843400-26844600	Genic enhancers	Monocytes-CD14+_RO01746	blood
36	chr10:26843400-26846000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:26843600-26844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:26843600-26845200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr10:26844000-26844400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:26844000-26845000	Enhancers	Duodenum Mucosa	Duodenum
41	chr10:26844200-26844400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:26844200-26844600	Weak transcription	Right Atrium	heart
43	chr10:26844200-26845200	Weak transcription	GM12878-XiMat	blood
44	chr10:26844200-26846200	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr10:26844200-26846200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr10:26844200-26847000	Enhancers	Liver	Liver

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