Variant report

Variant	rs28375710
Chromosome Location	chr10:26850442-26850443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26848889..26850459-chr10:26851524..26854140,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2018208	1.00[EUR][1000 genomes]
rs2992289	1.00[EUR][1000 genomes]
rs2992292	1.00[EUR][1000 genomes]
rs3006774	1.00[EUR][1000 genomes]
rs3006775	1.00[EUR][1000 genomes]
rs3006776	1.00[EUR][1000 genomes]
rs3006780	1.00[EUR][1000 genomes]
rs55901799	1.00[EUR][1000 genomes]
rs56095557	1.00[EUR][1000 genomes]
rs56723895	1.00[EUR][1000 genomes]
rs57722155	1.00[EUR][1000 genomes]
rs59565472	1.00[EUR][1000 genomes]
rs59739980	1.00[EUR][1000 genomes]
rs60209964	1.00[EUR][1000 genomes]
rs61167184	1.00[EUR][1000 genomes]
rs61603511	1.00[EUR][1000 genomes]
rs74128332	1.00[EUR][1000 genomes]
rs74128333	1.00[EUR][1000 genomes]
rs74128337	1.00[EUR][1000 genomes]
rs74128351	1.00[EUR][1000 genomes]
rs74128352	1.00[EUR][1000 genomes]
rs74128357	1.00[EUR][1000 genomes]
rs74128358	1.00[EUR][1000 genomes]
rs74128359	1.00[EUR][1000 genomes]
rs7914319	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv550229	chr10:26848206-26889823	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26834800-26858400	Strong transcription	Dnd41	blood
3	chr10:26839400-26854200	Strong transcription	Primary T cells from cord blood	blood
4	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:26840000-26850600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:26840000-26860000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:26840200-26855200	Weak transcription	Placenta	Placenta
9	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:26845000-26855600	Weak transcription	Esophagus	oesophagus
11	chr10:26845200-26853600	Strong transcription	Thymus	Thymus
12	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:26846000-26854000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:26846000-26859600	Strong transcription	Primary B cells from cord blood	blood
15	chr10:26846200-26859000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:26846400-26860800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr10:26846400-26861600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr10:26846600-26858200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:26846600-26858400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:26846600-26859600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:26846600-26860800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:26846800-26851000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:26846800-26851000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:26846800-26859400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:26846800-26861200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:26846800-26863000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:26847200-26854000	Weak transcription	Osteobl	bone
28	chr10:26847600-26857400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:26848200-26861000	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:26848400-26863000	Strong transcription	Fetal Thymus	thymus
31	chr10:26848600-26855600	Weak transcription	Gastric	stomach
32	chr10:26848800-26855400	Strong transcription	Primary hematopoietic stem cells	blood
33	chr10:26848800-26857800	Strong transcription	Liver	Liver
34	chr10:26849000-26852200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr10:26849000-26854800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:26849000-26855000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:26849000-26855400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:26849000-26855600	Strong transcription	Adipose Nuclei	Adipose
39	chr10:26849000-26857600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:26849000-26859000	Strong transcription	GM12878-XiMat	blood
41	chr10:26849000-26860600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:26849200-26855400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:26849200-26855400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:26849400-26855600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:26849400-26855600	Weak transcription	Pancreas	Pancrea
46	chr10:26849600-26855400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:26849800-26851200	Weak transcription	Spleen	Spleen
48	chr10:26849800-26853400	Weak transcription	Lung	lung
49	chr10:26849800-26853800	Weak transcription	Rectal Smooth Muscle	rectum

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