Variant report

Variant	rs55901799
Chromosome Location	chr10:26776544-26776545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508716	1.00[EUR][1000 genomes]
rs16926866	1.00[EUR][1000 genomes]
rs2018208	1.00[EUR][1000 genomes]
rs28375710	1.00[EUR][1000 genomes]
rs2992289	1.00[EUR][1000 genomes]
rs2992292	1.00[EUR][1000 genomes]
rs3006774	1.00[EUR][1000 genomes]
rs3006775	1.00[EUR][1000 genomes]
rs3006776	1.00[EUR][1000 genomes]
rs3006780	1.00[EUR][1000 genomes]
rs56095557	1.00[EUR][1000 genomes]
rs56723895	1.00[EUR][1000 genomes]
rs57722155	1.00[EUR][1000 genomes]
rs59565472	1.00[EUR][1000 genomes]
rs59739980	1.00[EUR][1000 genomes]
rs60209964	1.00[EUR][1000 genomes]
rs61167184	1.00[EUR][1000 genomes]
rs61603511	1.00[EUR][1000 genomes]
rs74126456	1.00[EUR][1000 genomes]
rs74126457	1.00[EUR][1000 genomes]
rs74126459	1.00[EUR][1000 genomes]
rs74126460	1.00[EUR][1000 genomes]
rs74126461	1.00[EUR][1000 genomes]
rs74126462	1.00[EUR][1000 genomes]
rs74126465	1.00[EUR][1000 genomes]
rs74126466	1.00[EUR][1000 genomes]
rs74128332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128337	1.00[EUR][1000 genomes]
rs74128351	1.00[EUR][1000 genomes]
rs74128352	1.00[EUR][1000 genomes]
rs74128357	1.00[EUR][1000 genomes]
rs74128358	1.00[EUR][1000 genomes]
rs74128359	1.00[EUR][1000 genomes]
rs7914319	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26767200-26777400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26769400-26792800	Weak transcription	Spleen	Spleen
3	chr10:26769400-26797000	Weak transcription	Pancreas	Pancrea
4	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:26771600-26776800	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:26771600-26777400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:26771600-26778400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:26771800-26777400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:26771800-26777600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr10:26772400-26779600	Genic enhancers	Fetal Thymus	thymus
13	chr10:26773800-26776600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:26774200-26776800	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:26774200-26776800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:26774200-26789200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:26774800-26778600	Strong transcription	Dnd41	blood
18	chr10:26775000-26776600	Flanking Active TSS	Hela-S3	cervix
19	chr10:26775200-26776600	Enhancers	Colon Smooth Muscle	Colon
20	chr10:26775400-26776600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:26775400-26776600	Enhancers	Liver	Liver
22	chr10:26775400-26776600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr10:26775400-26776800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr10:26775400-26777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:26775400-26778600	Genic enhancers	Primary B cells from cord blood	blood
26	chr10:26775600-26776600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:26775600-26776600	Enhancers	Adipose Nuclei	Adipose
28	chr10:26775600-26776600	Active TSS	NHDF-Ad	bronchial
29	chr10:26775600-26776600	Flanking Active TSS	NHEK	skin
30	chr10:26775600-26777200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:26775800-26776600	Enhancers	Stomach Mucosa	stomach
32	chr10:26775800-26776800	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr10:26775800-26777800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:26776000-26776800	Flanking Active TSS	GM12878-XiMat	blood
35	chr10:26776200-26776600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:26776200-26776600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:26776200-26776600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
38	chr10:26776200-26776600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:26776200-26776600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr10:26776200-26776600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr10:26776200-26776600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr10:26776200-26776600	Enhancers	Rectal Smooth Muscle	rectum
43	chr10:26776200-26776600	Flanking Active TSS	NH-A	brain
44	chr10:26776200-26776600	Flanking Active TSS	Osteobl	bone
45	chr10:26776200-26776800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:26776200-26777200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:26776200-26777400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:26776400-26776600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:26776400-26776600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr10:26776400-26776600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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