Variant report

Variant	rs61603511
Chromosome Location	chr10:26836572-26836573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26830143..26833130-chr10:26835854..26838349,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2018208	1.00[EUR][1000 genomes]
rs28375710	1.00[EUR][1000 genomes]
rs2992289	1.00[EUR][1000 genomes]
rs2992292	1.00[EUR][1000 genomes]
rs3006774	1.00[EUR][1000 genomes]
rs3006775	1.00[EUR][1000 genomes]
rs3006776	1.00[EUR][1000 genomes]
rs3006780	1.00[EUR][1000 genomes]
rs55901799	1.00[EUR][1000 genomes]
rs56095557	1.00[EUR][1000 genomes]
rs56723895	1.00[EUR][1000 genomes]
rs57722155	1.00[EUR][1000 genomes]
rs59565472	1.00[EUR][1000 genomes]
rs59739980	1.00[EUR][1000 genomes]
rs60209964	1.00[EUR][1000 genomes]
rs61167184	1.00[EUR][1000 genomes]
rs74128332	1.00[EUR][1000 genomes]
rs74128333	1.00[EUR][1000 genomes]
rs74128337	1.00[EUR][1000 genomes]
rs74128351	1.00[EUR][1000 genomes]
rs74128352	1.00[EUR][1000 genomes]
rs74128357	1.00[EUR][1000 genomes]
rs74128358	1.00[EUR][1000 genomes]
rs74128359	1.00[EUR][1000 genomes]
rs7914319	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
4	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:26813800-26837800	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:26814800-26837000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:26819600-26837000	Weak transcription	Right Atrium	heart
10	chr10:26820600-26844600	Weak transcription	Pancreas	Pancrea
11	chr10:26823800-26840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:26825400-26840800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:26827200-26839600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:26828000-26836800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:26830000-26845000	Strong transcription	Primary hematopoietic stem cells	blood
16	chr10:26830400-26838000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:26831000-26844600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:26832200-26839800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:26832200-26839800	Weak transcription	Lung	lung
20	chr10:26832200-26839800	Weak transcription	Spleen	Spleen
21	chr10:26833200-26837400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr10:26833600-26839800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:26834000-26836800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:26834000-26837200	Strong transcription	Primary B cells from peripheral blood	blood
25	chr10:26834000-26837600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:26834000-26837800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:26834000-26838000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr10:26834000-26838800	Weak transcription	Adipose Nuclei	Adipose
29	chr10:26834000-26839600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:26834200-26837200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:26834200-26839800	Weak transcription	Liver	Liver
32	chr10:26834200-26841200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr10:26834400-26838800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:26834400-26839600	Weak transcription	Thymus	Thymus
35	chr10:26834800-26858400	Strong transcription	Dnd41	blood
36	chr10:26835400-26839400	Strong transcription	Primary B cells from cord blood	blood
37	chr10:26835400-26841000	ZNF genes & repeats	GM12878-XiMat	blood
38	chr10:26835600-26837600	Weak transcription	Primary T cells from cord blood	blood
39	chr10:26835800-26837000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr10:26835800-26840600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr10:26836000-26836800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:26836000-26844400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:26836200-26837400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:26836200-26838400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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