Variant report

Variant	rs59739980
Chromosome Location	chr10:26800024-26800025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508716	1.00[EUR][1000 genomes]
rs16926866	1.00[EUR][1000 genomes]
rs2018208	1.00[EUR][1000 genomes]
rs28375710	1.00[EUR][1000 genomes]
rs2992289	1.00[EUR][1000 genomes]
rs2992292	1.00[EUR][1000 genomes]
rs3006774	1.00[EUR][1000 genomes]
rs3006775	1.00[EUR][1000 genomes]
rs3006776	1.00[EUR][1000 genomes]
rs3006780	1.00[EUR][1000 genomes]
rs55901799	1.00[EUR][1000 genomes]
rs56095557	1.00[EUR][1000 genomes]
rs56723895	1.00[EUR][1000 genomes]
rs57722155	1.00[EUR][1000 genomes]
rs59565472	1.00[EUR][1000 genomes]
rs60209964	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61167184	1.00[EUR][1000 genomes]
rs61603511	1.00[EUR][1000 genomes]
rs74126456	1.00[EUR][1000 genomes]
rs74126457	1.00[EUR][1000 genomes]
rs74126459	1.00[EUR][1000 genomes]
rs74126460	1.00[EUR][1000 genomes]
rs74126461	1.00[EUR][1000 genomes]
rs74126462	1.00[EUR][1000 genomes]
rs74126465	1.00[EUR][1000 genomes]
rs74126466	1.00[EUR][1000 genomes]
rs74128332	1.00[EUR][1000 genomes]
rs74128333	1.00[EUR][1000 genomes]
rs74128337	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128351	1.00[EUR][1000 genomes]
rs74128352	1.00[EUR][1000 genomes]
rs74128357	1.00[EUR][1000 genomes]
rs74128358	1.00[EUR][1000 genomes]
rs74128359	1.00[EUR][1000 genomes]
rs7914319	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:26780200-26834000	Strong transcription	Dnd41	blood
6	chr10:26780400-26805800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:26781000-26814000	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:26781200-26800600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:26781200-26808000	Strong transcription	Primary B cells from cord blood	blood
13	chr10:26784400-26808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:26792400-26813400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr10:26792800-26816600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:26792800-26819200	Strong transcription	Primary T cells from cord blood	blood
17	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
18	chr10:26794000-26801200	Strong transcription	Adipose Nuclei	Adipose
19	chr10:26794000-26801600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:26794600-26801000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:26794600-26801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:26794800-26800400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:26795000-26800400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:26795000-26800600	Weak transcription	Lung	lung
25	chr10:26795000-26800600	Weak transcription	Spleen	Spleen
26	chr10:26795200-26801200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:26797000-26800400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:26797000-26801000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:26797000-26801200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:26797200-26801200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:26797400-26811400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:26798200-26800400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:26798200-26801000	Strong transcription	Thymus	Thymus
34	chr10:26798400-26800600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:26798600-26800400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:26798600-26800400	Weak transcription	Liver	Liver
37	chr10:26799600-26800200	Weak transcription	GM12878-XiMat	blood
38	chr10:26799800-26801200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:26799800-26801600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:26799800-26813400	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:26800000-26812400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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