Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508716	1.00[EUR][1000 genomes]
rs11015010	1.00[EUR][1000 genomes]
rs12253114	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16926634	1.00[EUR][1000 genomes]
rs16926866	1.00[EUR][1000 genomes]
rs2992289	1.00[EUR][1000 genomes]
rs2992292	1.00[EUR][1000 genomes]
rs3006774	1.00[EUR][1000 genomes]
rs3006775	1.00[EUR][1000 genomes]
rs3006776	1.00[EUR][1000 genomes]
rs3006780	1.00[EUR][1000 genomes]
rs57059254	1.00[EUR][1000 genomes]
rs61322866	1.00[EUR][1000 genomes]
rs7068224	1.00[EUR][1000 genomes]
rs74126456	1.00[EUR][1000 genomes]
rs74126457	1.00[EUR][1000 genomes]
rs74126459	1.00[EUR][1000 genomes]
rs74126460	1.00[EUR][1000 genomes]
rs74126461	1.00[EUR][1000 genomes]
rs74126462	1.00[EUR][1000 genomes]
rs74126465	1.00[EUR][1000 genomes]
rs74126466	1.00[EUR][1000 genomes]
rs7476345	1.00[EUR][1000 genomes]
rs7897279	1.00[EUR][1000 genomes]
rs7922748	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8190585	1.00[EUR][1000 genomes]
rs8190593	1.00[EUR][1000 genomes]
rs8190689	1.00[EUR][1000 genomes]
rs8190720	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8190807	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8190815	1.00[EUR][1000 genomes]
rs928198	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26554400-26562200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26558000-26563200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:26558800-26559600	Genic enhancers	Brain Germinal Matrix	brain
4	chr10:26559000-26563400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:26559000-26563400	Weak transcription	Fetal Brain Female	brain
6	chr10:26559000-26576600	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search: