Variant report

Variant	rs8190593
Chromosome Location	chr10:26505930-26505931
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr10:26503915-26507739	H1-neurons	neurons:	n/a	n/a
2	CTBP2	chr10:26503474-26507402	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr10:26502119-26508104	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr10:26503373-26508237	H1-neurons	neurons:	n/a	n/a
5	SUZ12	chr10:26503603-26508046	NT2-D1	testis:	n/a	n/a
6	SUZ12	chr10:26504611-26507634	H1-hESC	embryonic stem cell:	n/a	n/a
7	REST	chr10:26501382-26511273	H1-neurons	neurons:	n/a	chr10:26506086-26506100 chr10:26505231-26505240 chr10:26505220-26505240 chr10:26503893-26503900 chr10:26505220-26505240 chr10:26506967-26506980 chr10:26508383-26508401 chr10:26505195-26505208 chr10:26505220-26505234 chr10:26507108-26507121 chr10:26505222-26505232 chr10:26505227-26505240 chr10:26505224-26505237 chr10:26505220-26505240 chr10:26505221-26505239 chr10:26505224-26505237 chr10:26502538-26502551
8	SIN3A	chr10:26502684-26506045	H1-hESC	embryonic stem cell:	n/a	chr10:26505222-26505231 chr10:26505431-26505444 chr10:26503916-26503926 chr10:26505045-26505054 chr10:26505221-26505235 chr10:26505227-26505240

Variant related genes	Relation type
GAD2	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10508716	1.00[EUR][1000 genomes]
rs11015010	1.00[EUR][1000 genomes]
rs12253114	1.00[EUR][1000 genomes]
rs16926634	1.00[EUR][1000 genomes]
rs16926866	1.00[EUR][1000 genomes]
rs2992289	1.00[EUR][1000 genomes]
rs57059254	1.00[EUR][1000 genomes]
rs61322866	1.00[EUR][1000 genomes]
rs7068224	1.00[EUR][1000 genomes]
rs74126456	1.00[EUR][1000 genomes]
rs74126457	1.00[EUR][1000 genomes]
rs74126459	1.00[EUR][1000 genomes]
rs74126460	1.00[EUR][1000 genomes]
rs74126461	1.00[EUR][1000 genomes]
rs74126462	1.00[EUR][1000 genomes]
rs74126465	1.00[EUR][1000 genomes]
rs74126466	1.00[EUR][1000 genomes]
rs7476345	1.00[EUR][1000 genomes]
rs7897279	1.00[EUR][1000 genomes]
rs7922748	1.00[EUR][1000 genomes]
rs8190585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8190689	1.00[EUR][1000 genomes]
rs8190714	1.00[EUR][1000 genomes]
rs8190720	1.00[EUR][1000 genomes]
rs8190807	1.00[EUR][1000 genomes]
rs8190815	1.00[EUR][1000 genomes]
rs928198	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26502800-26508600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr10:26503000-26507800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr10:26503600-26506600	Bivalent Enhancer	Fetal Thymus	thymus
4	chr10:26503600-26507400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr10:26503600-26507600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr10:26503600-26507600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr10:26503800-26506000	Bivalent Enhancer	Spleen	Spleen
8	chr10:26503800-26506200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:26503800-26507200	Bivalent Enhancer	Liver	Liver
10	chr10:26503800-26507200	Bivalent Enhancer	Fetal Brain Male	brain
11	chr10:26503800-26507600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
12	chr10:26504000-26506000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:26504000-26507200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr10:26504200-26506200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:26504200-26506200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
16	chr10:26504400-26506600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
17	chr10:26504400-26507400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
18	chr10:26504600-26506000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr10:26504600-26506000	Bivalent Enhancer	Lung	lung
20	chr10:26504600-26506200	Bivalent Enhancer	Fetal Intestine Small	intestine
21	chr10:26504600-26507000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
22	chr10:26504600-26507400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
23	chr10:26504600-26507400	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr10:26504600-26507400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
25	chr10:26504800-26506000	Bivalent Enhancer	Esophagus	oesophagus
26	chr10:26504800-26506200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr10:26504800-26506400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
28	chr10:26505000-26506000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr10:26505000-26506200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
30	chr10:26505000-26507400	Bivalent Enhancer	Primary B cells from cord blood	blood
31	chr10:26505000-26507400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr10:26505000-26507400	Bivalent Enhancer	Fetal Stomach	stomach
33	chr10:26505200-26506000	Flanking Active TSS	Pancreas	Pancrea
34	chr10:26505200-26506200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
35	chr10:26505200-26506200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
36	chr10:26505200-26506800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:26505200-26510800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
38	chr10:26505400-26506000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:26505400-26506000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:26505400-26506000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:26505400-26506000	Bivalent/Poised TSS	Fetal Kidney	kidney
42	chr10:26505400-26506400	Bivalent Enhancer	Fetal Heart	heart
43	chr10:26505400-26507200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:26505400-26507800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
45	chr10:26505400-26507800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
46	chr10:26505400-26508200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
47	chr10:26505600-26506000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
48	chr10:26505600-26506000	Bivalent Enhancer	Thymus	Thymus
49	chr10:26505600-26506400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
50	chr10:26505600-26506600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell

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