Variant report

Variant	rs11015002
Chromosome Location	chr10:26516240-26516241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11015003	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015004	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3781116	0.81[MKK][hapmap]
rs3893052	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3893253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58945266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482537	0.84[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074534	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7079102	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080693	0.80[AMR][1000 genomes]
rs7081084	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7087011	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7089304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7090581	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7893194	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190586	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8190604	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190621	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26514600-26518400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26515800-26518800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26516200-26516400	Genic enhancers	Brain Germinal Matrix	brain
4	chr10:26516200-26516400	Bivalent Enhancer	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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