Variant report

Variant	rs8190604
Chromosome Location	chr10:26508958-26508959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11015002	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015003	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015004	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3893052	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3893253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58945266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482537	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074534	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7079102	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080693	0.80[AMR][1000 genomes]
rs7081084	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7087011	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7089304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7090581	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7893194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190586	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8190621	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26505200-26510800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
2	chr10:26505600-26510000	Bivalent/Poised TSS	Fetal Brain Female	brain
3	chr10:26507600-26509000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr10:26508200-26510400	Active TSS	Brain Germinal Matrix	brain
5	chr10:26508800-26509000	Active TSS	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links