Variant report

Variant	rs6482537
Chromosome Location	chr10:26509579-26509580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11015002	0.84[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015003	0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015004	0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3893052	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3893253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58945266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074534	0.85[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7079102	0.84[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080693	0.80[AMR][1000 genomes]
rs7081084	0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7087011	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7089304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7090581	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7893194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7922748	1.00[JPT][hapmap]
rs8190586	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8190602	1.00[JPT][hapmap]
rs8190604	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190621	0.84[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26505200-26510800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
2	chr10:26505600-26510000	Bivalent/Poised TSS	Fetal Brain Female	brain
3	chr10:26508200-26510400	Active TSS	Brain Germinal Matrix	brain
4	chr10:26509000-26509800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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