Variant report

Variant	rs8190602
Chromosome Location	chr10:26508783-26508784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6482537	1.00[JPT][hapmap]
rs7072964	0.85[YRI][hapmap]
rs7922748	1.00[JPT][hapmap]
rs8190729	1.00[YRI][hapmap]
rs8190734	0.82[YRI][hapmap]
rs8190736	0.82[YRI][hapmap]
rs8190737	0.83[YRI][hapmap]
rs8190741	0.82[YRI][hapmap]
rs8190799	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26505200-26510800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
2	chr10:26505600-26510000	Bivalent/Poised TSS	Fetal Brain Female	brain
3	chr10:26507600-26509000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr10:26507800-26508800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr10:26508200-26510400	Active TSS	Brain Germinal Matrix	brain
6	chr10:26508400-26508800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr10:26508600-26508800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr10:26508600-26508800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr10:26508600-26508800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:26508600-26508800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr10:26508600-26508800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr10:26508600-26508800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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