Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12269222	1.00[MEX][hapmap]
rs58555760	1.00[AMR][1000 genomes]
rs7069695	0.85[YRI][hapmap]
rs7072964	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7898281	1.00[AMR][1000 genomes]
rs7913376	0.85[YRI][hapmap]
rs7914300	1.00[MEX][hapmap]
rs8190602	0.82[YRI][hapmap]
rs8190620	0.85[YRI][hapmap]
rs8190682	1.00[AMR][1000 genomes]
rs8190723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190729	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs8190734	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190737	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190741	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190751	1.00[AMR][1000 genomes]
rs8190763	1.00[AMR][1000 genomes]
rs8190771	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs8190785	1.00[AMR][1000 genomes]
rs8190816	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26559000-26576600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26562400-26565600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26563000-26563600	Enhancers	Brain Germinal Matrix	brain
4	chr10:26563000-26563600	Enhancers	Brain Hippocampus Middle	brain
5	chr10:26563000-26563800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:26563200-26563800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:26563200-26564000	Enhancers	Brain Anterior Caudate	brain
8	chr10:26563200-26564000	Enhancers	Fetal Brain Male	brain
9	chr10:26563400-26563800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:26563400-26564000	Enhancers	Fetal Brain Female	brain
11	chr10:26563400-26564000	Enhancers	Pancreas	Pancrea

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