Variant report

Variant	rs7072964
Chromosome Location	chr10:26561074-26561075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58555760	1.00[AMR][1000 genomes]
rs7069695	0.85[YRI][hapmap]
rs7898281	1.00[AMR][1000 genomes]
rs7913376	0.87[YRI][hapmap]
rs8190602	0.85[YRI][hapmap]
rs8190620	0.87[YRI][hapmap]
rs8190682	1.00[AMR][1000 genomes]
rs8190723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190729	0.82[YRI][hapmap]
rs8190734	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190736	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190737	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190741	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190751	1.00[AMR][1000 genomes]
rs8190763	1.00[AMR][1000 genomes]
rs8190771	0.87[YRI][hapmap];0.93[AFR][1000 genomes]
rs8190785	1.00[AMR][1000 genomes]
rs8190816	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26554400-26562200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26558000-26563200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:26559000-26563400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:26559000-26563400	Weak transcription	Fetal Brain Female	brain
5	chr10:26559000-26576600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:26560200-26563000	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links