Variant report
| Variant | rs7913376 |
|---|---|
| Chromosome Location | chr10:26493879-26493880 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:26488026..26490324-chr10:26492162..26494858,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs7069695 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs7072964 | 0.87[YRI][hapmap] |
| rs73594320 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7898197 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8190620 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs8190734 | 0.85[YRI][hapmap] |
| rs8190736 | 0.85[YRI][hapmap] |
| rs8190737 | 0.85[YRI][hapmap] |
| rs8190741 | 0.85[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
