Variant report

Variant	rs12269222
Chromosome Location	chr10:26747636-26747637
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26747214..26749398-chr10:26751753..26754356,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11015112	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015115	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015121	0.87[ASW][hapmap];0.82[LWK][hapmap];0.84[MKK][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes]
rs11818670	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253528	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12257389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60347004	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60828834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128307	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128310	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7914300	1.00[MEX][hapmap]
rs8190734	1.00[MEX][hapmap]
rs8190736	1.00[MEX][hapmap]
rs8190741	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26728200-26757000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26731200-26749600	Weak transcription	Spleen	Spleen
3	chr10:26739000-26757000	Weak transcription	Liver	Liver
4	chr10:26745400-26749000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:26745400-26753000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:26745400-26757400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:26746200-26757400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:26746400-26752200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:26746400-26763200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:26746600-26749800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:26746600-26756000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:26746800-26751200	Weak transcription	Primary T cells from cord blood	blood
13	chr10:26747000-26747800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr10:26747000-26748800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:26747200-26748600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:26747200-26750800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:26747400-26748600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:26747400-26749000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:26747400-26749200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:26747400-26749200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:26747400-26749200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:26747400-26749600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:26747400-26749600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:26747400-26749600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:26747400-26749600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:26747400-26749600	Weak transcription	Thymus	Thymus
27	chr10:26747400-26749800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:26747400-26750800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:26747400-26750800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr10:26747400-26752200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr10:26747600-26748400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:26747600-26748400	Weak transcription	Fetal Thymus	thymus
33	chr10:26747600-26749000	Weak transcription	Primary B cells from cord blood	blood
34	chr10:26747600-26749000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr10:26747600-26749000	Weak transcription	GM12878-XiMat	blood
36	chr10:26747600-26749200	Weak transcription	Dnd41	blood

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