Variant report

Variant	rs11015112
Chromosome Location	chr10:26733260-26733261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11015115	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015121	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11818670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12257389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269222	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60347004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60828834	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26728200-26745200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26728200-26757000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26729200-26735400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:26730000-26733600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:26730200-26738600	Weak transcription	Liver	Liver
6	chr10:26731000-26738000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:26731200-26734600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:26731200-26737200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:26731200-26749600	Weak transcription	Spleen	Spleen
10	chr10:26731400-26733600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:26731400-26733600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:26731400-26734400	Genic enhancers	Primary B cells from cord blood	blood
13	chr10:26731400-26734600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:26731400-26734600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:26731400-26734800	Weak transcription	Adipose Nuclei	Adipose
16	chr10:26731400-26735400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:26731400-26737200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr10:26731400-26737400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:26731600-26733600	Enhancers	Primary T cells from cord blood	blood
20	chr10:26731600-26734400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:26731600-26734600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:26731800-26735400	Genic enhancers	Dnd41	blood
23	chr10:26732000-26733600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr10:26732000-26734000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:26732000-26734400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:26732000-26737000	Genic enhancers	Fetal Thymus	thymus
27	chr10:26732200-26733800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
28	chr10:26732600-26733400	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr10:26732600-26733600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:26732600-26735800	Genic enhancers	Thymus	Thymus
31	chr10:26732600-26736000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:26732800-26733600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:26733000-26733400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:26733000-26733600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:26733000-26733600	Genic enhancers	Primary B cells from peripheral blood	blood
36	chr10:26733000-26733600	Genic enhancers	Monocytes-CD14+_RO01746	blood
37	chr10:26733000-26733800	ZNF genes & repeats	GM12878-XiMat	blood
38	chr10:26733000-26735400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr10:26733000-26736400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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