Variant report

Variant	rs12253528
Chromosome Location	chr10:26729093-26729094
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26728384..26731035-chr10:26984963..26987025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11015112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015121	0.82[AFR][1000 genomes]
rs11818670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12257389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269222	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60347004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60828834	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26725600-26730400	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr10:26726000-26729400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:26726000-26730200	Active TSS	Thymus	Thymus
4	chr10:26726000-26730800	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr10:26726200-26730200	Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr10:26726400-26729200	Active TSS	Duodenum Mucosa	Duodenum
7	chr10:26726400-26729200	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr10:26726400-26730200	Active TSS	Fetal Thymus	thymus
9	chr10:26726600-26729400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:26727000-26729200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:26727000-26729200	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr10:26727000-26729200	Active TSS	Right Atrium	heart
13	chr10:26727000-26729400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:26727000-26730200	Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr10:26727000-26730200	Active TSS	GM12878-XiMat	blood
16	chr10:26727200-26729200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr10:26727400-26729200	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr10:26727400-26730200	Active TSS	Primary T cells fromperipheralblood	blood
19	chr10:26727600-26729400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:26727600-26729400	Active TSS	Brain Anterior Caudate	brain
21	chr10:26727600-26729600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:26728000-26729400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:26728200-26729600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr10:26728200-26730200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr10:26728200-26730200	Weak transcription	NH-A	brain
26	chr10:26728200-26730400	Weak transcription	Spleen	Spleen
27	chr10:26728200-26731200	Active TSS	Brain Hippocampus Middle	brain
28	chr10:26728200-26745200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:26728200-26757000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:26728400-26729600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:26728400-26729800	Active TSS	Liver	Liver
32	chr10:26728400-26730200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:26728400-26730400	Weak transcription	NHLF	lung
34	chr10:26728600-26729200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr10:26728600-26729200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr10:26728600-26730200	Weak transcription	Pancreas	Pancrea
37	chr10:26728600-26731400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr10:26728800-26729200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
39	chr10:26728800-26729600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr10:26728800-26730000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:26728800-26731600	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr10:26729000-26729200	Active TSS	Fetal Muscle Leg	muscle
43	chr10:26729000-26729400	Flanking Active TSS	Primary B cells from peripheral blood	blood
44	chr10:26729000-26729400	Enhancers	Osteobl	bone
45	chr10:26729000-26729600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:26729000-26730200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:26729000-26730200	Flanking Active TSS	Dnd41	blood

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