Variant report

Variant	rs12257389
Chromosome Location	chr10:26730755-26730756
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26728384..26731035-chr10:26984963..26987025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11015112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015121	0.82[AFR][1000 genomes]
rs11818670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269222	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60347004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60828834	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26726000-26730800	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr10:26728200-26731200	Active TSS	Brain Hippocampus Middle	brain
3	chr10:26728200-26745200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:26728200-26757000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:26728600-26731400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr10:26728800-26731600	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr10:26729200-26730800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:26729200-26735400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:26729400-26731400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:26729600-26731400	Enhancers	Adipose Nuclei	Adipose
11	chr10:26729800-26731200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:26729800-26731600	Enhancers	Osteobl	bone
13	chr10:26730000-26730800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:26730000-26730800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr10:26730000-26731000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:26730000-26731200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr10:26730000-26733600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:26730200-26731200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr10:26730200-26731200	Enhancers	NH-A	brain
20	chr10:26730200-26731400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
21	chr10:26730200-26731400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr10:26730200-26731600	Genic enhancers	Primary monocytes fromperipheralblood	blood
23	chr10:26730200-26731800	Transcr. at gene 5' and 3'	Dnd41	blood
24	chr10:26730200-26731800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
25	chr10:26730200-26732000	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
26	chr10:26730200-26738600	Weak transcription	Liver	Liver
27	chr10:26730400-26731200	Enhancers	Spleen	Spleen
28	chr10:26730400-26731200	Enhancers	NHLF	lung
29	chr10:26730400-26731400	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
30	chr10:26730400-26731600	Genic enhancers	Primary B cells from peripheral blood	blood
31	chr10:26730600-26730800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:26730600-26730800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:26730600-26731000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:26730600-26731000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:26730600-26731000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr10:26730600-26731000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:26730600-26731000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:26730600-26731000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:26730600-26731200	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
40	chr10:26730600-26731800	Active TSS	Thymus	Thymus
41	chr10:26730600-26732000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:26730600-26732000	Genic enhancers	Monocytes-CD14+_RO01746	blood
43	chr10:26730600-26732600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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