Variant report

Variant	rs35311015
Chromosome Location	chr10:26369529-26369530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10082469	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10508710	0.81[ASN][1000 genomes]
rs10828945	0.81[ASN][1000 genomes]
rs10828946	0.81[ASN][1000 genomes]
rs10828953	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014924	0.81[ASN][1000 genomes]
rs11014925	0.81[ASN][1000 genomes]
rs11014934	0.82[ASN][1000 genomes]
rs11014944	0.81[ASN][1000 genomes]
rs11014945	0.81[ASN][1000 genomes]
rs11014947	0.81[ASN][1000 genomes]
rs11014948	0.81[ASN][1000 genomes]
rs11014951	0.83[ASN][1000 genomes]
rs11014959	0.84[ASN][1000 genomes]
rs11593128	0.81[ASN][1000 genomes]
rs11595393	0.81[ASN][1000 genomes]
rs11598861	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11812518	0.82[ASN][1000 genomes]
rs11819592	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12244889	0.81[ASN][1000 genomes]
rs12246202	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12247598	0.83[ASN][1000 genomes]
rs12247650	0.81[ASN][1000 genomes]
rs12248210	0.81[ASN][1000 genomes]
rs12252534	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12253015	0.81[ASN][1000 genomes]
rs12261502	0.84[ASN][1000 genomes]
rs12262670	0.82[ASN][1000 genomes]
rs12263561	0.81[ASN][1000 genomes]
rs12263990	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12266221	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12267078	0.82[ASN][1000 genomes]
rs12267297	0.82[ASN][1000 genomes]
rs12569363	0.81[ASN][1000 genomes]
rs12569739	0.82[ASN][1000 genomes]
rs12570534	0.81[ASN][1000 genomes]
rs12572695	0.81[ASN][1000 genomes]
rs12761327	0.81[ASN][1000 genomes]
rs12761590	0.81[ASN][1000 genomes]
rs12765561	0.81[ASN][1000 genomes]
rs12766250	0.81[ASN][1000 genomes]
rs12766929	0.81[ASN][1000 genomes]
rs12767114	0.81[ASN][1000 genomes]
rs12768268	0.81[ASN][1000 genomes]
rs12768879	0.81[ASN][1000 genomes]
rs12768930	0.81[ASN][1000 genomes]
rs12769263	0.81[ASN][1000 genomes]
rs12770421	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12770618	0.80[ASN][1000 genomes]
rs12771414	0.82[ASN][1000 genomes]
rs12772553	0.82[ASN][1000 genomes]
rs12773390	0.81[ASN][1000 genomes]
rs12773856	0.81[ASN][1000 genomes]
rs12774270	0.84[ASN][1000 genomes]
rs12774889	0.81[ASN][1000 genomes]
rs12775228	0.80[ASN][1000 genomes]
rs12775421	0.81[ASN][1000 genomes]
rs12776584	0.81[ASN][1000 genomes]
rs12776958	0.80[ASN][1000 genomes]
rs12777006	0.85[ASN][1000 genomes]
rs12779671	0.81[ASN][1000 genomes]
rs12785093	0.81[ASN][1000 genomes]
rs12785116	0.81[ASN][1000 genomes]
rs1339808	0.81[ASN][1000 genomes]
rs1339809	0.81[ASN][1000 genomes]
rs1339812	0.81[ASN][1000 genomes]
rs1361376	0.82[ASN][1000 genomes]
rs1402437	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1521029	0.81[ASN][1000 genomes]
rs1521030	0.81[ASN][1000 genomes]
rs1521031	0.81[ASN][1000 genomes]
rs1521032	0.81[ASN][1000 genomes]
rs1521033	0.81[ASN][1000 genomes]
rs1539323	0.85[ASN][1000 genomes]
rs1546701	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1546702	0.82[ASN][1000 genomes]
rs17666471	0.81[ASN][1000 genomes]
rs17666495	0.81[ASN][1000 genomes]
rs17666501	0.81[ASN][1000 genomes]
rs17739106	0.81[ASN][1000 genomes]
rs17739425	0.80[ASN][1000 genomes]
rs17813720	0.82[ASN][1000 genomes]
rs1818747	0.80[ASN][1000 genomes]
rs1856603	0.82[ASN][1000 genomes]
rs1915478	0.82[ASN][1000 genomes]
rs1949616	0.80[ASN][1000 genomes]
rs2090797	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2176937	0.82[ASN][1000 genomes]
rs2176941	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2176942	0.81[ASN][1000 genomes]
rs34135459	0.80[ASN][1000 genomes]
rs34457588	0.81[ASN][1000 genomes]
rs34474695	0.81[ASN][1000 genomes]
rs34832963	0.82[ASN][1000 genomes]
rs34834344	0.81[ASN][1000 genomes]
rs35137356	0.84[ASN][1000 genomes]
rs35177483	0.81[ASN][1000 genomes]
rs35636005	0.81[ASN][1000 genomes]
rs3758441	0.81[ASN][1000 genomes]
rs3758443	0.81[ASN][1000 genomes]
rs3758444	0.81[ASN][1000 genomes]
rs3817417	0.80[ASN][1000 genomes]
rs3817418	0.81[ASN][1000 genomes]
rs3817419	0.81[ASN][1000 genomes]
rs3817421	0.81[ASN][1000 genomes]
rs3824695	0.81[ASN][1000 genomes]
rs3824696	0.81[ASN][1000 genomes]
rs3824700	0.81[ASN][1000 genomes]
rs3824701	0.81[ASN][1000 genomes]
rs3824702	0.81[ASN][1000 genomes]
rs3824703	0.81[ASN][1000 genomes]
rs3824704	0.81[ASN][1000 genomes]
rs3824705	0.81[ASN][1000 genomes]
rs4313469	0.81[ASN][1000 genomes]
rs4378287	0.81[ASN][1000 genomes]
rs4548528	0.81[ASN][1000 genomes]
rs4581343	0.81[ASN][1000 genomes]
rs4581344	0.81[ASN][1000 genomes]
rs4631780	0.81[ASN][1000 genomes]
rs4998836	0.81[ASN][1000 genomes]
rs4998838	0.81[ASN][1000 genomes]
rs4998839	0.81[ASN][1000 genomes]
rs4998840	0.81[ASN][1000 genomes]
rs5012431	0.81[ASN][1000 genomes]
rs56011042	0.81[ASN][1000 genomes]
rs56403024	0.81[ASN][1000 genomes]
rs58217723	0.81[ASN][1000 genomes]
rs59764643	0.80[ASN][1000 genomes]
rs61840796	0.83[ASN][1000 genomes]
rs61840798	0.81[ASN][1000 genomes]
rs61840836	0.84[ASN][1000 genomes]
rs61846589	0.81[ASN][1000 genomes]
rs61846590	0.81[ASN][1000 genomes]
rs61849336	0.81[ASN][1000 genomes]
rs61849340	0.80[ASN][1000 genomes]
rs61849343	0.81[ASN][1000 genomes]
rs61849344	0.81[ASN][1000 genomes]
rs66657341	0.81[ASN][1000 genomes]
rs67216996	0.81[ASN][1000 genomes]
rs7073081	0.80[ASN][1000 genomes]
rs7074453	0.81[ASN][1000 genomes]
rs7080516	0.82[ASN][1000 genomes]
rs7084483	0.81[ASN][1000 genomes]
rs7095515	0.81[ASN][1000 genomes]
rs7095668	0.81[ASN][1000 genomes]
rs7095982	0.81[ASN][1000 genomes]
rs7096274	0.81[ASN][1000 genomes]
rs7097387	0.81[ASN][1000 genomes]
rs7097468	0.81[ASN][1000 genomes]
rs7894273	0.81[ASN][1000 genomes]
rs7895318	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7895734	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7898544	0.85[ASN][1000 genomes]
rs7899450	0.82[ASN][1000 genomes]
rs7899567	0.82[ASN][1000 genomes]
rs7899880	0.81[ASN][1000 genomes]
rs7906251	0.82[ASN][1000 genomes]
rs7907187	0.82[ASN][1000 genomes]
rs7912435	0.82[ASN][1000 genomes]
rs7913502	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7913733	0.81[ASN][1000 genomes]
rs7916320	0.81[ASN][1000 genomes]
rs949896	0.81[ASN][1000 genomes]
rs9629915	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26369000-26371200	Weak transcription	Right Atrium	heart
2	chr10:26369400-26373800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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