Variant report

Variant	esv3713
Chromosome Location	chr10:26354666-26355127
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11593320	chr10:26354756-26354757	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs370642822	chr10:26354767-26354768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186131166	chr10:26354775-26354776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs192242160	chr10:26354813-26354814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs550167809	chr10:26354840-26354841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs369921633	chr10:26354842-26354843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs570344922	chr10:26354863-26354864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs71893961	chr10:26354940-26354941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs55935469	chr10:26354951-26354952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs548776827	chr10:26354982-26354983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs568988564	chr10:26354998-26354999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs535455080	chr10:26355007-26355008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs36041747	chr10:26355008-26355009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs551694663	chr10:26355038-26355039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs74231509	chr10:26355073-26355074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs183233183	chr10:26355078-26355079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs12761327	chr10:26355099-26355100	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs187986864	chr10:26355105-26355106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21525872	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26344200-26355800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26352800-26358400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links