Variant report

Variant	esv20509
Chromosome Location	chr10:18852387-18862559
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 595 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:595 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573367189	chr10:18852393-18852394	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs539595289	chr10:18852397-18852398	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs115964274	chr10:18852453-18852454	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs565572872	chr10:18852513-18852514	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs149164012	chr10:18852536-18852537	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs62636215	chr10:18852539-18852540	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs562433362	chr10:18852603-18852604	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs529679012	chr10:18852611-18852612	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs143738687	chr10:18852623-18852624	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs560024914	chr10:18852639-18852640	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs527474484	chr10:18852651-18852652	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs552136358	chr10:18852665-18852666	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs116190430	chr10:18852672-18852673	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs62648429	chr10:18852685-18852686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs192995416	chr10:18852692-18852693	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555656928	chr10:18852724-18852725	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs549683641	chr10:18852750-18852751	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs200676833	chr10:18852763-18852764	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552533728	chr10:18852785-18852786	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs140678239	chr10:18852809-18852810	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs535492704	chr10:18852829-18852830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs185090299	chr10:18852869-18852870	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs555037269	chr10:18852888-18852889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201382917	chr10:18852889-18852890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534303978	chr10:18852909-18852910	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199703043	chr10:18852919-18852920	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559153941	chr10:18852946-18852947	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs115582618	chr10:18852958-18852959	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs368594629	chr10:18852984-18852985	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs372774217	chr10:18852991-18852992	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs375074109	chr10:18852998-18852999	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs367571537	chr10:18852999-18853000	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372441435	chr10:18853001-18853002	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145869149	chr10:18853072-18853073	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs574359092	chr10:18853074-18853075	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541503668	chr10:18853081-18853082	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs377019111	chr10:18853084-18853085	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs527352134	chr10:18853096-18853097	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201127720	chr10:18853109-18853110	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs148170344	chr10:18853120-18853121	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs563907996	chr10:18853141-18853142	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs531428524	chr10:18853162-18853163	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs549647076	chr10:18853179-18853180	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111208104	chr10:18853195-18853196	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs568052929	chr10:18853209-18853210	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs117445494	chr10:18853220-18853221	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs568814026	chr10:18853224-18853225	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556240599	chr10:18853248-18853249	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111064011	chr10:18853252-18853253	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566868046	chr10:18853256-18853257	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
3	chr10:18841600-18854600	ZNF genes & repeats	Primary T cells from cord blood	blood
4	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr10:18841800-18853000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:18842000-18853000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
9	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:18843200-18852600	Strong transcription	Ovary	ovary
13	chr10:18844000-18853400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
15	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
18	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
20	chr10:18849000-18854000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:18849000-18868600	Weak transcription	Gastric	stomach
22	chr10:18849400-18852400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:18849800-18853000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:18849800-18853000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:18849800-18854000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:18850000-18853200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:18850800-18852400	ZNF genes & repeats	Primary B cells from cord blood	blood
31	chr10:18850800-18852400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr10:18850800-18853600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chr10:18850800-18854400	ZNF genes & repeats	Adipose Nuclei	Adipose
34	chr10:18850800-18856000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:18850800-18856600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr10:18851200-18860200	ZNF genes & repeats	Liver	Liver
37	chr10:18851400-18852600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:18851400-18852800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:18851400-18855200	Weak transcription	K562	blood
40	chr10:18852200-18852400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:18852400-18852600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:18852600-18864800	Weak transcription	Ovary	ovary
43	chr10:18852800-18853200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
44	chr10:18853200-18853600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:18853200-18866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr10:18854200-18854400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
47	chr10:18855000-18862200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr10:18855400-18855800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
49	chr10:18857600-18858000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:18857800-18858800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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