Variant report

Variant	rs62636215
Chromosome Location	chr10:18852539-18852540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10732437	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10764584	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764587	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10764661	0.89[ASN][1000 genomes]
rs10828879	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10828901	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10828906	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829156	0.89[ASN][1000 genomes]
rs10829157	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10829199	0.89[ASN][1000 genomes]
rs11014830	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11014852	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1917209	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1917823	0.89[ASN][1000 genomes]
rs4328135	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4338439	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4456162	0.89[ASN][1000 genomes]
rs4475830	0.89[ASN][1000 genomes]
rs4606373	0.89[ASN][1000 genomes]
rs4634984	0.89[ASN][1000 genomes]
rs4636555	0.89[ASN][1000 genomes]
rs4747353	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4748479	0.89[ASN][1000 genomes]
rs4748493	0.89[ASN][1000 genomes]
rs4748494	0.89[ASN][1000 genomes]
rs4748504	0.89[ASN][1000 genomes]
rs4748507	0.89[ASN][1000 genomes]
rs6482516	0.87[EUR][1000 genomes]
rs6482534	0.89[ASN][1000 genomes]
rs6482546	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6482565	0.87[AFR][1000 genomes]
rs6482567	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7075678	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7077786	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7079776	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7081435	0.89[ASN][1000 genomes]
rs7082235	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7093907	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7095666	0.89[ASN][1000 genomes]
rs7098721	0.89[ASN][1000 genomes]
rs7099307	0.89[ASN][1000 genomes]
rs7100884	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7895709	0.89[ASN][1000 genomes]
rs7895775	0.89[ASN][1000 genomes]
rs7908550	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7909552	0.89[ASN][1000 genomes]
rs7910506	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7911922	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918933	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7923072	0.89[ASN][1000 genomes]
rs8181345	0.89[ASN][1000 genomes]
rs9731044	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:107 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1835982	chr10:18833550-18872699	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv511455	chr10:18837285-18854168	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
13	nsv550043	chr10:18837285-18859153	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
14	esv1814421	chr10:18839350-18862211	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
15	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	esv18824	chr10:18841137-18862749	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1815720	chr10:18841795-18853581	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
19	nsv550045	chr10:18841795-18854685	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
20	nsv550046	chr10:18841795-18855161	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
21	nsv550047	chr10:18841795-18855755	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
22	esv1847851	chr10:18841795-18857730	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
23	esv1850351	chr10:18841795-18857730	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
24	nsv550048	chr10:18841795-18857730	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv1808982	chr10:18841795-18858271	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv1817510	chr10:18841795-18858271	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
27	nsv550049	chr10:18841795-18858271	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
28	nsv550050	chr10:18841795-18858664	Strong transcription Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
29	nsv550051	chr10:18841795-18859450	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
30	nsv550052	chr10:18841795-18860469	ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
31	nsv550053	chr10:18841795-18861203	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
32	nsv550054	chr10:18841795-18862122	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
33	esv1802087	chr10:18841795-18862211	ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
34	esv1805552	chr10:18841795-18862211	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
35	esv1807060	chr10:18841795-18862211	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
36	esv1812459	chr10:18841795-18862211	ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
37	esv1834849	chr10:18841795-18862211	ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
38	esv1836472	chr10:18841795-18862211	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
39	esv1842030	chr10:18841795-18862211	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
40	esv1850544	chr10:18841795-18862211	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
41	nsv550055	chr10:18841795-18862211	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
42	nsv550056	chr10:18841795-18862728	ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
43	esv1845973	chr10:18841795-18872699	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
44	esv1793359	chr10:18841795-18872872	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
45	nsv550057	chr10:18843332-18858203	ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
46	nsv550058	chr10:18843332-18859153	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
47	esv1843559	chr10:18843332-18859450	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
48	nsv550059	chr10:18843332-18859450	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
49	nsv550060	chr10:18843332-18860138	ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
50	nsv550061	chr10:18843332-18860469	Strong transcription Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
3	chr10:18841600-18854600	ZNF genes & repeats	Primary T cells from cord blood	blood
4	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr10:18841800-18853000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:18842000-18853000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
9	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:18843200-18852600	Strong transcription	Ovary	ovary
13	chr10:18844000-18853400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
15	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
18	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
20	chr10:18849000-18854000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:18849000-18868600	Weak transcription	Gastric	stomach
22	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:18849800-18853000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:18849800-18853000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:18849800-18854000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:18850000-18853200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:18850800-18853600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr10:18850800-18854400	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr10:18850800-18856000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:18850800-18856600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr10:18851200-18860200	ZNF genes & repeats	Liver	Liver
34	chr10:18851400-18852600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:18851400-18852800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:18851400-18855200	Weak transcription	K562	blood
37	chr10:18852400-18852600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin

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