Variant report

Variant	rs7911922
Chromosome Location	chr10:18831697-18831698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10732437	1.00[ASN][1000 genomes]
rs10741086	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs10764584	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10764587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764661	1.00[ASN][1000 genomes]
rs10828879	1.00[CEU][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10828901	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10828906	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10829156	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10829157	1.00[ASN][1000 genomes]
rs10829199	1.00[ASN][1000 genomes]
rs11014830	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11014852	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1917209	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917823	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs4328135	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4338439	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4456162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4475830	1.00[ASN][1000 genomes]
rs4484992	1.00[CHB][hapmap]
rs4606373	1.00[ASN][1000 genomes]
rs4634984	1.00[ASN][1000 genomes]
rs4636555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4747348	0.85[CEU][hapmap]
rs4747353	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4748476	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs4748479	1.00[ASN][1000 genomes]
rs4748493	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4748494	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4748504	1.00[ASN][1000 genomes]
rs4748505	0.81[AFR][1000 genomes]
rs4748507	1.00[ASN][1000 genomes]
rs62636215	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6482516	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6482534	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6482545	0.89[ASN][1000 genomes]
rs6482546	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6482567	1.00[ASN][1000 genomes]
rs7075678	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7077786	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7079776	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7081435	1.00[CHB][hapmap];0.93[YRI][hapmap];1.00[ASN][1000 genomes]
rs7082235	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090926	0.89[ASN][1000 genomes]
rs7092437	1.00[CHB][hapmap]
rs7093907	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7095666	1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs7098721	1.00[ASN][1000 genomes]
rs7099307	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7100884	1.00[ASN][1000 genomes]
rs7895709	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7895775	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7904365	0.87[AMR][1000 genomes]
rs7908550	1.00[ASN][1000 genomes]
rs7909552	1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7910506	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7918933	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923072	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8181345	1.00[ASN][1000 genomes]
rs9731044	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042073	chr10:18806900-18838303	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18815200-18843600	Weak transcription	A549	lung
2	chr10:18816400-18841800	Strong transcription	Liver	Liver
3	chr10:18820800-18841600	Weak transcription	Hela-S3	cervix
4	chr10:18822000-18840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:18822000-18848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:18822400-18833600	Strong transcription	Primary T cells from cord blood	blood
7	chr10:18822800-18841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:18823400-18834800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:18823600-18836600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:18824200-18834800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:18824200-18846200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:18824200-18850600	Weak transcription	NHLF	lung
13	chr10:18825000-18835800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:18825600-18841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:18827000-18835800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:18827200-18842000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:18827200-18845200	Weak transcription	NHEK	skin
18	chr10:18827400-18841600	Weak transcription	HMEC	breast
19	chr10:18827600-18839400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:18828200-18835000	Weak transcription	Fetal Brain Male	brain
21	chr10:18828600-18837800	Weak transcription	Psoas Muscle	Psoas
22	chr10:18828600-18838800	Weak transcription	Colonic Mucosa	Colon
23	chr10:18828600-18841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:18828600-18841600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:18828600-18841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:18828600-18841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:18828600-18841800	Weak transcription	Pancreas	Pancrea
28	chr10:18828600-18843000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:18828600-18843400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:18828600-18844400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:18828600-18845400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:18828800-18846000	Weak transcription	Spleen	Spleen
33	chr10:18829000-18831800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr10:18829000-18840400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:18829000-18841800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:18829200-18833000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:18829200-18851200	Weak transcription	Esophagus	oesophagus
38	chr10:18829800-18833600	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:18829800-18837400	Weak transcription	GM12878-XiMat	blood
40	chr10:18829800-18838000	Weak transcription	Right Ventricle	heart
41	chr10:18829800-18844000	Weak transcription	Brain Angular Gyrus	brain
42	chr10:18830000-18842000	Weak transcription	Fetal Brain Female	brain
43	chr10:18830000-18842400	Weak transcription	Brain Germinal Matrix	brain
44	chr10:18830200-18841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:18830200-18841800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:18830200-18841800	Weak transcription	Aorta	Aorta
47	chr10:18830200-18851000	Weak transcription	Thymus	Thymus
48	chr10:18830400-18831800	Weak transcription	Fetal Heart	heart
49	chr10:18830400-18831800	Weak transcription	Fetal Kidney	kidney
50	chr10:18830400-18832000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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