Variant report

Variant	rs7081435
Chromosome Location	chr10:18956340-18956341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10732437	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741086	1.00[CHB][hapmap]
rs10741120	0.91[EUR][1000 genomes]
rs10741131	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10764587	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10764661	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829156	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829157	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829199	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917209	1.00[ASN][1000 genomes]
rs1917823	1.00[ASN][1000 genomes]
rs4316423	0.87[EUR][1000 genomes]
rs4338439	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4475830	1.00[ASN][1000 genomes]
rs4484992	1.00[CHB][hapmap]
rs4606373	1.00[ASN][1000 genomes]
rs4634984	1.00[ASN][1000 genomes]
rs4636555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4748476	1.00[CHB][hapmap]
rs4748479	1.00[ASN][1000 genomes]
rs4748493	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4748494	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4748502	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4748504	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748505	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4748507	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62636215	0.89[ASN][1000 genomes]
rs6482516	0.85[YRI][hapmap]
rs6482534	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6482545	0.89[ASN][1000 genomes]
rs6482546	0.89[ASN][1000 genomes]
rs6482565	0.86[EUR][1000 genomes]
rs6482567	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075678	1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077786	1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082235	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7084709	0.88[EUR][1000 genomes]
rs7090926	0.89[ASN][1000 genomes]
rs7092437	1.00[CHB][hapmap]
rs7093907	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095666	1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098721	1.00[ASN][1000 genomes]
rs7099307	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7100884	1.00[ASN][1000 genomes]
rs7895709	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7895775	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7908550	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909552	1.00[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911922	1.00[ASN][1000 genomes]
rs7918933	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7922241	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7923072	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181345	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9731044	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18949400-18973200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:18949600-18957000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:18949600-18972000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18949800-18956600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:18950000-18956600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:18950000-18957600	Weak transcription	Fetal Stomach	stomach
7	chr10:18950200-18956800	Weak transcription	Left Ventricle	heart
8	chr10:18950200-18957000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:18950200-18957000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:18950200-18957600	Weak transcription	Placenta	Placenta
11	chr10:18950400-18957000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:18950800-18962400	Weak transcription	Fetal Kidney	kidney
13	chr10:18951000-18956600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:18951000-18956600	Weak transcription	Brain Germinal Matrix	brain
15	chr10:18951000-18957000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:18951000-18957400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:18951000-18961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:18951000-18962400	Weak transcription	Fetal Lung	lung
19	chr10:18951000-18965800	Weak transcription	Colonic Mucosa	Colon
20	chr10:18951000-18966600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:18951000-18967400	Weak transcription	Esophagus	oesophagus
22	chr10:18951000-18971800	Weak transcription	Spleen	Spleen
23	chr10:18951000-18976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:18951200-18956600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:18951200-18956800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:18951200-18957200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:18951200-18957600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:18951200-18964400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:18951400-18957600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:18951400-18957800	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:18951400-18962400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:18951400-18962800	Weak transcription	Fetal Brain Male	brain
33	chr10:18951400-18973800	Weak transcription	Aorta	Aorta
34	chr10:18952200-18956800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:18952400-18957000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:18953600-18957600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:18953600-18957600	Weak transcription	Fetal Intestine Small	intestine
38	chr10:18953800-18956400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:18953800-18956600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:18953800-18956800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:18954000-18956400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:18954000-18956400	Enhancers	NHLF	lung
43	chr10:18954000-18959400	Weak transcription	Ovary	ovary
44	chr10:18954000-18960200	Weak transcription	Lung	lung
45	chr10:18954000-18966600	Strong transcription	Dnd41	blood
46	chr10:18954200-18957000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:18954200-18957000	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:18954400-18956400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:18954400-18956400	Enhancers	NHDF-Ad	bronchial
50	chr10:18954400-18956600	Weak transcription	Thymus	Thymus

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