Variant report

Variant	rs4748502
Chromosome Location	chr10:18935961-18935962
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10732437	0.91[EUR][1000 genomes]
rs10741120	0.97[EUR][1000 genomes]
rs10741131	0.87[EUR][1000 genomes]
rs10764661	0.91[EUR][1000 genomes]
rs10829156	0.88[EUR][1000 genomes]
rs10829157	0.88[EUR][1000 genomes]
rs10829199	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1917823	0.81[EUR][1000 genomes]
rs4316423	0.96[EUR][1000 genomes]
rs4338439	0.89[EUR][1000 genomes]
rs4748504	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4748505	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4748507	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6482546	0.84[EUR][1000 genomes]
rs6482565	0.91[EUR][1000 genomes]
rs6482567	0.94[EUR][1000 genomes]
rs7075678	0.86[EUR][1000 genomes]
rs7077786	0.88[EUR][1000 genomes]
rs7081435	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7084709	0.82[EUR][1000 genomes]
rs7093907	0.89[EUR][1000 genomes]
rs7095666	0.94[EUR][1000 genomes]
rs7097534	0.85[EUR][1000 genomes]
rs7100884	0.81[EUR][1000 genomes]
rs7908550	0.88[EUR][1000 genomes]
rs7909552	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7923072	0.94[EUR][1000 genomes]
rs8181345	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9731044	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18905000-18938200	Weak transcription	Hela-S3	cervix
2	chr10:18916800-18936200	Weak transcription	A549	lung
3	chr10:18916800-18937000	Weak transcription	GM12878-XiMat	blood
4	chr10:18916800-18938400	Weak transcription	HSMMtube	muscle
5	chr10:18916800-18939800	Weak transcription	Aorta	Aorta
6	chr10:18916800-18940200	Weak transcription	Spleen	Spleen
7	chr10:18917000-18936800	Weak transcription	Brain Germinal Matrix	brain
8	chr10:18917000-18937200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr10:18917000-18937400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr10:18917000-18938000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:18917000-18938200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:18917000-18938200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:18917000-18938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:18917000-18938200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:18917000-18938200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:18917000-18938200	Weak transcription	Brain Angular Gyrus	brain
17	chr10:18917000-18938400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:18917000-18938400	Weak transcription	Ovary	ovary
19	chr10:18917000-18938400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:18917000-18938400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:18917000-18938800	Weak transcription	HSMM	muscle
22	chr10:18917000-18939600	Weak transcription	Placenta	Placenta
23	chr10:18917000-18939800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:18917000-18940200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:18917000-18940200	Weak transcription	Lung	lung
26	chr10:18917200-18937800	Weak transcription	Adipose Nuclei	Adipose
27	chr10:18921400-18939000	Weak transcription	Right Ventricle	heart
28	chr10:18922600-18939600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:18923200-18936600	Weak transcription	Fetal Brain Male	brain
30	chr10:18924800-18937800	Weak transcription	Fetal Lung	lung
31	chr10:18925200-18937600	Weak transcription	Fetal Heart	heart
32	chr10:18925200-18939200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:18925600-18939400	Weak transcription	Brain Substantia Nigra	brain
34	chr10:18926000-18940200	Weak transcription	Small Intestine	intestine
35	chr10:18926200-18939200	Weak transcription	Fetal Kidney	kidney
36	chr10:18926400-18938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:18926600-18938200	Weak transcription	NHEK	skin
38	chr10:18927400-18939600	Weak transcription	Pancreas	Pancrea
39	chr10:18927800-18937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:18928000-18938400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:18928200-18938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:18928200-18939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:18928400-18938800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:18928800-18936000	Weak transcription	NH-A	brain
45	chr10:18928800-18937800	Weak transcription	Brain Anterior Caudate	brain
46	chr10:18928800-18939600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:18928800-18939600	Weak transcription	Gastric	stomach
48	chr10:18929000-18937000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr10:18929000-18939000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:18929400-18936800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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