Variant report

Variant	rs6482565
Chromosome Location	chr10:18900593-18900594
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18891764..18894660-chr10:18898788..18901660,3	K562	blood:
2	chr10:18893160..18894729-chr10:18899323..18901039,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10732437	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741120	0.94[EUR][1000 genomes]
rs10741131	0.84[EUR][1000 genomes]
rs10764587	0.83[AFR][1000 genomes]
rs10764661	0.87[EUR][1000 genomes]
rs10829156	0.84[EUR][1000 genomes]
rs10829157	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10829199	0.85[EUR][1000 genomes]
rs1917209	0.84[AFR][1000 genomes]
rs1917823	0.81[EUR][1000 genomes]
rs4316423	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4338439	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4748502	0.91[EUR][1000 genomes]
rs4748504	0.94[EUR][1000 genomes]
rs4748505	0.82[EUR][1000 genomes]
rs4748507	0.86[EUR][1000 genomes]
rs62636215	0.87[AFR][1000 genomes]
rs6482546	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6482567	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7075678	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7077786	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7081435	0.86[EUR][1000 genomes]
rs7082235	0.80[AFR][1000 genomes]
rs7093907	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7095666	0.97[EUR][1000 genomes]
rs7097534	0.82[EUR][1000 genomes]
rs7100884	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7908550	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7909552	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7923072	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs8181345	0.84[EUR][1000 genomes]
rs9731044	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:18863800-18902200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:18868000-18902200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:18868200-18904800	Weak transcription	HSMMtube	muscle
9	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
10	chr10:18870200-18900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:18870600-18908400	Weak transcription	Brain Substantia Nigra	brain
12	chr10:18870600-18916000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:18871600-18910000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:18872800-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:18873200-18908200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:18873600-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:18875000-18916000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:18875600-18900600	Weak transcription	Esophagus	oesophagus
19	chr10:18875600-18912600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
21	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
22	chr10:18877400-18916200	Weak transcription	Pancreas	Pancrea
23	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
24	chr10:18877600-18916400	Weak transcription	Gastric	stomach
25	chr10:18878000-18915600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
27	chr10:18882000-18916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:18884200-18900600	Weak transcription	Brain Germinal Matrix	brain
29	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
30	chr10:18884400-18900600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
32	chr10:18884800-18909400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:18885200-18901200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:18885200-18904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:18885400-18900600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:18885400-18916200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:18885400-18916400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:18891000-18900600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:18891600-18916400	Weak transcription	Lung	lung
40	chr10:18892400-18902400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:18894200-18901200	Strong transcription	Dnd41	blood
42	chr10:18894800-18900800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr10:18895400-18900600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:18895400-18901000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:18895400-18903000	Weak transcription	Colonic Mucosa	Colon
46	chr10:18895400-18908000	Weak transcription	Fetal Brain Male	brain
47	chr10:18895600-18916400	Weak transcription	Left Ventricle	heart
48	chr10:18896400-18907200	Strong transcription	Primary T cells from cord blood	blood
49	chr10:18896600-18916400	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:18896600-18916400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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